RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 C9orf131Q5VYM1 1079 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 AGTRAPQ6RW13 159 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 ANKK1Q8NFD2 765 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 ANGPTL6Q8NI99 470 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 C12orf43Q96C57 262 aaKnown RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 TMEM246Q9BRR3 403 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 C1orf198Q9H425 327 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 TAS2R3Q9NYW6 316 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 PCDHGC4Q9Y5F7 938 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 PEX12O00623 359 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 RAD1O60671 282 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 CDH15P55291 814 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 CSTF1Q05048 431 aaKnown RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 ZNF792Q3KQV3 632 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 PRICKLE2Q7Z3G6 844 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 SLC46A3Q7Z3Q1 461 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 SPPL2CQ8IUH8 684 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 LGI4Q8N135 537 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 GATA6Q92908 595 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 MTERF1Q99551 399 aaKnown RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 SULT4A1Q9BR01 284 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 GP1BBP13224 206 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 UGT2B7P16662 529 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 CKMT2P17540 419 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 POLR2HP52434 150 aaKnown RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 HERV-K104P61576 105 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 PAQR7Q86WK9 346 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 RNF141Q8WVD5 230 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 S100PBPQ96BU1 408 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 ICKQ9UPZ9 632 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 DHDHQ9UQ10 334 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 MGAMO43451 1857 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 DNAJC25-GNG10A0A024R161 153 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 E9PI62 339 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 MITFO75030 526 aaPredicted RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 AHSGP02765 367 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 MAOAP21397 527 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 CERS1P27544 350 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 TAS2R30P59541 319 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 EGR3Q06889 387 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 EXT1Q16394 746 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 PLK5Q496M5 336 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 OR52N1Q8NH53 320 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 CLEC4DQ8WXI8 215 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 PRAP1Q96NZ9 151 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 FCRL3Q96P31 734 aaPredicted RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 DIRC2Q96SL1 478 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 DNTTIP1Q9H147 329 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 POLR3HQ9Y535 204 aaPredicted RBP3.82□□□□□ -1.8
USH2A-201ENST00000307340 USP3Q9Y6I4 520 aa3.82□□□□□ -1.8
USH2A-201ENST00000307340 CHURC1-FNTBB4DL54 471 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 H7BY64 318 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 HMGA1P17096 107 aaKnown RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 GABRR2P28476 465 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ACY1Q03154 408 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 NFATC3Q12968 1075 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 DCAF12L1Q5VU92 463 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ZNF691Q5VV52 312 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 DEGS2Q6QHC5 323 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 HEATR1Q9H583 2144 aaKnown RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 TRBC2A0A5B9 178 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 UMAD1C9J7I0 102 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 C17orf112F2Z3M2 114 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 H0YIG0 161 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ABCD4O14678 606 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 UCHL1P09936 223 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 PRLHRP49683 370 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 NCBP2P52298 156 aaKnown RBP eCLIP3.81□□□□□ -1.8
USH2A-201ENST00000307340 HBMQ6B0K9 141 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 RANBP10Q6VN20 620 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 CATSPERDQ86XM0 798 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 SLC35F3Q8IY50 421 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ARHGEF39Q8N4T4 335 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 OR14A16Q8NHC5 309 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 CANT1Q8WVQ1 401 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ZNF419Q96HQ0 510 aaPredicted RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 CRLF2Q9HC73 371 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 BRD7Q9NPI1 651 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 MDC1Q14676 2089 aaKnown RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 ERAL1O75616 437 aaKnown RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 CHRM2P08172 466 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 SYN1P17600 705 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 TACR1P25103 407 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 PTPN6P29350 595 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 MFGE8Q08431 387 aaPredicted RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 P2RY14Q15391 338 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 LTB4RQ15722 352 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 RBMS3Q6XE24 437 aaKnown RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 TMEM173Q86WV6 379 aaPredicted RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 DUSP19Q8WTR2 217 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 THAP4Q8WY91 577 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ADAD1Q96M93 576 aaKnown RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 CDCA4Q9BXL8 241 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ZNF224Q9NZL3 707 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 ESPL1Q14674 2120 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 TP53BP1Q12888 1972 aaPredicted RBP3.81□□□□□ -1.8
USH2A-201ENST00000307340 TBC1D3IA0A087WXS9 549 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 TMEM129A0AVI4 362 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 PRAMEF26H0Y7S4 382 aa3.81□□□□□ -1.8
USH2A-201ENST00000307340 FCGR2AP12318 317 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms