RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ACP2P11117 423 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 CD52P31358 61 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 IKZF1Q13422 519 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 GRB14Q14449 540 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 ZNF169Q14929 603 aaPredicted RBP12.69□□□□□ -0.38
SKA3-201ENST00000298260 CDKL4Q5MAI5 379 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 SLC30A6Q6NXT4 461 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 TRIM40Q6P9F5 258 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 THOC6Q86W42 341 aaKnown RBP12.69□□□□□ -0.38
SKA3-201ENST00000298260 ANKRD53Q8N9V6 530 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 POLDIP3Q9BY77 421 aaKnown RBP12.69□□□□□ -0.38
SKA3-201ENST00000298260 CXorf36Q9H7Y0 433 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 FANCFQ9NPI8 374 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 LHX3Q9UBR4 397 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 NDOR1Q9UHB4 597 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 MGAT4BQ9UQ53 548 aa12.69□□□□□ -0.38
SKA3-201ENST00000298260 VCANP13611 3396 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 OR2W5A6NFC9 320 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 C5orf58C9J3I9 102 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 DNASE2O00115 360 aaPredicted RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 RNASET2O00584 256 aaKnown RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 FRS3O43559 492 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 PIP5K1CO60331 668 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 PRMT3O60678 531 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 PTP4A3O75365 173 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 ARAFP10398 606 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 VEGFCP49767 419 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 HNMTP50135 292 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 DSG2Q14126 1118 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 MRPL58Q14197 206 aaKnown RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 OR5M10Q6IEU7 315 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 MACC1Q6ZN28 852 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 LINC00469Q8N7U9 141 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 ZNF485Q8NCK3 441 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 SLC12A9Q9BXP2 914 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 TTTY10Q9BZA0 68 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 SMG9Q9H0W8 520 aaKnown RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 FBXO44Q9H4M3 255 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 C11orf49Q9H6J7 331 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 SH2B3Q9UQQ2 575 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 ANGPT4Q9Y264 503 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 TMEM129A0AVI4 362 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 SLC9B1P1A6NJY1 282 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 OR2AG2A6NM03 316 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 OR5K4A6NMS3 321 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 L7N2F9 121 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 SGTAO43765 313 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 SOX30O94993 753 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 IGLV3-27P01718 113 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 HLA-DPB1P04440 258 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 ELNP15502 786 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 BAMBIQ13145 260 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 ZNF177Q13360 481 aaPredicted RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 SPOUT1Q5T280 376 aaKnown RBP12.68□□□□□ -0.38
SKA3-201ENST00000298260 RETSATQ6NUM9 610 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 TMPRSS11BQ86T26 416 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 OR13C5Q8NGS8 318 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 GANCQ8TET4 914 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 YIPF5Q969M3 257 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 PPCDCQ96CD2 204 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 GSDMCQ9BYG8 508 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 TDP1Q9NUW8 608 aa12.68□□□□□ -0.38
SKA3-201ENST00000298260 C17orf102A2RUQ5 167 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 B3GALNT1O75752 331 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 PTHLHP12272 177 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 SNRPBP14678 240 aaKnown RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 F8A1P23610 371 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 TIA1P31483 386 aaKnown RBP eCLIP12.67□□□□□ -0.38
SKA3-201ENST00000298260 FZD5Q13467 585 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 TMEM88Q6PEY1 159 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 COMMD6Q7Z4G1 85 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 OXR1Q8N573 874 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 OR8K3Q8NH51 312 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 TRMT10AQ8TBZ6 339 aaKnown RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 WFDC5Q8TCV5 224 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 KLK6Q92876 244 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 WNT2BQ93097 391 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 IFT22Q9H7X7 185 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 KCNK12Q9HB15 430 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 ACSL5Q9ULC5 683 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 NUBP2Q9Y5Y2 271 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 CSNK1G3Q9Y6M4 447 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 SESN1Q9Y6P5 492 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 A0A1W2PRB8 838 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 NPIPB15A6NHN6 443 aaPredicted RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 ANHXE9PGG2 379 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 ARPC5O15511 151 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 SLC19A2O60779 497 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 FZD7O75084 574 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 KLK1P06870 262 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 XPAP23025 273 aaPredicted RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 THBS2P35442 1172 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 STXBP1P61764 594 aaKnown RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 TAP2Q03519 686 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 ZNF630Q2M218 657 aaPredicted RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 REEP3Q6NUK4 255 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 OAFQ86UD1 273 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 FGF11Q92914 225 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms