RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 VARS2Q5ST30 1063 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CNIH2Q6PI25 160 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ZSCAN4Q8NAM6 433 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KDF1Q8NAX2 398 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM234Q8WY98 164 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 DCUN1D4Q92564 292 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KAZALD1Q96I82 304 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BMFQ96LC9 184 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NOL4LQ96MY1 436 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 OR7D2Q96RA2 312 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 G6PC3Q9BUM1 346 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 POLMQ9NP87 494 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SERINC1Q9NRX5 453 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 VPS29Q9UBQ0 182 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 LAMP3Q9UQV4 416 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MARF1Q9Y4F3 1742 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM218A2RU14 115 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FAM24AA6NFZ4 105 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ACKR2O00590 384 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 WNT9AO14904 365 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TBL1XO60907 577 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PSMB3P49720 205 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 UBE2MP61081 183 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PAN2Q504Q3 1202 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 C9orf64Q5T6V5 341 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 STEAP1BQ6NZ63 245 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ANKRD16Q6P6B7 361 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HHIPL2Q6UWX4 724 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 LILRB1Q8NHL6 650 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 LHFPL5Q8TAF8 219 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BRIX1Q8TDN6 353 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 OSBPL2Q9H1P3 480 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MEAF6Q9HAF1 191 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 POT1Q9NUX5 634 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MYEF2Q9P2K5 600 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 WDR45Q9Y484 360 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 B3GAT3O94766 335 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 YBX3P16989 372 aaKnown RBP eCLIP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BCKDHBP21953 392 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GCAP28676 217 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PPP4CP60510 307 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ARHGAP11BQ3KRB8 267 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FLYWCH1Q4VC44 716 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PAGE3Q5JUK9 113 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HENMT1Q5T8I9 393 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ACOT7LQ6ZUV0 252 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BPHLQ86WA6 291 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 LILRB2Q8N423 598 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLC43A3Q8NBI5 491 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 OR56B1Q8NGI3 324 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 OR13F1Q8NGS4 319 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BSCL2Q96G97 398 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CCDC120Q96HB5 630 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CCDC74BQ96LY2 380 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PKP2Q99959 881 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ARHGAP23Q9P227 1491 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NKX1-2Q9UD57 310 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SCML2Q9UQR0 700 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PSME4Q14997 1843 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLIT3O75094 1523 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 RAC2P15153 192 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PRKAG1P54619 331 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ARMC5Q96C12 935 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 EDEM2Q9BV94 578 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FAM206AQ9NX38 181 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TFCP2L1Q9NZI6 479 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 XKRY2A2RUG3 117 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLC31A2O15432 143 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MSI1O43347 362 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 AOC2O75106 756 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 IL1RNP18510 177 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FMO3P31513 532 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 RFX2P48378 723 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 OR12D2P58182 307 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 UBXN2AP68543 259 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KCNJ11Q14654 390 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HBMQ6B0K9 141 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CYB5R2Q6BCY4 276 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SERPINA11Q86U17 422 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF566Q969W8 418 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MECRQ9BV79 373 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLC17A7Q9P2U7 560 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NUMBLQ9Y6R0 609 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 LPLP06858 475 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SYPP08247 313 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PSMB1P20618 241 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 INAVAQ3KP66 663 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KIAA0319Q5VV43 1072 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GK5Q6ZS86 529 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TMPPEQ6ZT21 453 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF485Q8NCK3 441 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM169Q96HH4 297 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 OMDQ99983 421 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLC32A1Q9H598 525 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 A0A1W2PPK0 400 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM221A6NGB7 291 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SCDO00767 359 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SCGB1D2O95969 90 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 DBIP07108 87 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 JUNBP17275 347 aaPredicted RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms