RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 DACH2Q96NX9 599 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 MKLN1Q9UL63 735 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 LSM2Q9Y333 95 aaKnown RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 A0A0J9YY10 115 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 AP3D1O14617 1153 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 TLX2O43763 284 aaPredicted RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 PORP16435 677 aaPredicted RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 SOWAHCQ53LP3 525 aaPredicted RBP22.41■■□□□ 1.18
TRIM54-201ENST00000296098 ZNF730Q6ZMV8 503 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 PLEKHM3Q6ZWE6 761 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 SLC34A3Q8N130 599 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 OPALINQ96PE5 141 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 GDF15Q99988 308 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 MND1Q9BWT6 205 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 TAPBPLQ9BX59 468 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 RNF167Q9H6Y7 350 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 WDR45Q9Y484 360 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 A3GALT2U3KPV4 340 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 SPACA6W5XKT8 324 aa22.41■■□□□ 1.18
TRIM54-201ENST00000296098 ARHGAP33O14559 1287 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 TRHRP34981 398 aaPredicted RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 COL9A2Q14055 689 aaPredicted RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 DOC2BQ14184 412 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 DUSP5Q16690 384 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 ARHGAP11BQ3KRB8 267 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 PUS10Q3MIT2 529 aaKnown RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 SYT14P1Q58G82 188 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 ZNF628Q5EBL2 1059 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 ACSM5Q6NUN0 579 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 ATCAYQ86WG3 371 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 MEX3DQ86XN8 651 aaKnown RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 CACTIN-AS1Q8N1I8 211 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 CLIP4Q8N3C7 705 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 SIMC1Q8NDZ2 872 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 SLC37A2Q8TED4 501 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 PLA2G12AQ9BZM1 189 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 RACGAP1Q9H0H5 632 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 EGLN3Q9H6Z9 239 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 MTHFD2LQ9H903 347 aaPredicted RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 HRASLS2Q9NWW9 162 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 KIR2DS5A0A0G2JLQ3 304 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 A0A0G2JNG1 304 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 KIR2DS3K7RE56 304 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 KPNA4O00629 521 aaPredicted RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 CELA2BP08218 269 aaPredicted RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 ACP2P11117 423 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 PSMD7P51665 324 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 ID2Q02363 134 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 KHDRBS1Q07666 443 aaKnown RBP eCLIP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 TSPAN31Q12999 210 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 KIR2DS5Q14953 304 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 SSX1Q16384 188 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 KIAA0895LQ68EN5 471 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 TYW3Q6IPR3 259 aaKnown RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 PRSS41Q7RTY9 318 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 PEX5LQ8IYB4 626 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 PIGXQ8TBF5 258 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 SNRNP27Q8WVK2 155 aaKnown RBP22.4■■□□□ 1.18
TRIM54-201ENST00000296098 LRR1Q96L50 414 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 DAPK2Q9UIK4 370 aa22.4■■□□□ 1.18
TRIM54-201ENST00000296098 OR5K4A6NMS3 321 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 DSCR3O14972 297 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 CSO75390 466 aaKnown RBP22.39■■□□□ 1.17
TRIM54-201ENST00000296098 SCG5P05408 212 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 CKMT1AP12532 417 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 CCR5P51681 352 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 EIF2B5Q13144 721 aaKnown RBP22.39■■□□□ 1.17
TRIM54-201ENST00000296098 RNLSQ5VYX0 342 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 RRM2BQ7LG56 351 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 PRICKLE2Q7Z3G6 844 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 ZNF554Q86TJ5 538 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 SFTPA2Q8IWL1 248 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 TMEFF1Q8IYR6 380 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 ZNF582Q96NG8 517 aaPredicted RBP22.39■■□□□ 1.17
TRIM54-201ENST00000296098 NXF2Q9GZY0 626 aaKnown RBP22.39■■□□□ 1.17
TRIM54-201ENST00000296098 CLEC2DQ9UHP7 191 aa22.39■■□□□ 1.17
TRIM54-201ENST00000296098 C19orf53Q9UNZ5 99 aaPredicted RBP22.39■■□□□ 1.17
TRIM54-201ENST00000296098 UBXN7O94888 489 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 SOX18P35713 384 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 HOXC5Q00444 222 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 LARS2Q15031 903 aaKnown RBP22.38■■□□□ 1.17
TRIM54-201ENST00000296098 SNAPC1Q16533 368 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 TRIM16LQ309B1 348 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 TRMT12Q53H54 448 aaKnown RBP22.38■■□□□ 1.17
TRIM54-201ENST00000296098 ZNF542PQ5EBM4 170 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 FHL5Q5TD97 284 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 SLC27A4Q6P1M0 643 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 ZNF836Q6ZNA1 936 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 FAM46AQ96IP4 442 aaKnown RBP22.38■■□□□ 1.17
TRIM54-201ENST00000296098 MCHR1Q99705 422 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 C6orf62Q9GZU0 229 aaPredicted RBP22.38■■□□□ 1.17
TRIM54-201ENST00000296098 CNIH4Q9P003 139 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 CYP8B1Q9UNU6 501 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 SHISA7A6NL88 538 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 SPHARQ15513 63 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 PERM1Q5SV97 790 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 RASSF6Q6ZTQ3 369 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 TAF8Q7Z7C8 310 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 CSNK1A1LQ8N752 337 aa22.38■■□□□ 1.17
TRIM54-201ENST00000296098 FGF11Q92914 225 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms