RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FBRSQ9HAH7 460 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 PCOLCE2Q9UKZ9 415 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 LIPT1Q9Y234 373 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 A3GALT2U3KPV4 340 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 LRP4O75096 1905 aa18.78■□□□□ 0.6
VPS53-201ENST00000291074 EIF2S1P05198 315 aaKnown RBP18.77■□□□□ 0.6
VPS53-201ENST00000291074 HNRNPA2B1P22626 353 aaKnown RBP18.77■□□□□ 0.6
VPS53-201ENST00000291074 S100A5P33763 92 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 ETV5P41161 510 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 CD97P48960 835 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 ETV1P50549 477 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 RNF144AP50876 292 aaPredicted RBP18.77■□□□□ 0.6
VPS53-201ENST00000291074 FAM214AQ32MH5 1076 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 CCNJQ5T5M9 372 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 FRRS1Q6ZNA5 592 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 LINC00471Q8N535 108 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 PARP16Q8N5Y8 322 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 DNAJC5GQ8N7S2 189 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 TM4SF19Q96DZ7 209 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 MIR1-1HGQ9H1L0 117 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 MSRAQ9UJ68 235 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 PIAS3Q9Y6X2 628 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 THY1P04216 161 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 CCNYL3P0C7X3 344 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 SOX18P35713 384 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 TPMTP51580 245 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 SMSP52788 366 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 RGS8P57771 180 aaPredicted RBP18.77■□□□□ 0.6
VPS53-201ENST00000291074 SRP54P61011 504 aaKnown RBP18.77■□□□□ 0.6
VPS53-201ENST00000291074 ADAM15Q13444 863 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 LIPKQ5VXJ0 399 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 STEAP3Q658P3 488 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 FIGLAQ6QHK4 219 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 USP30Q70CQ3 517 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 TEX47Q8TBZ9 253 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 ASB12Q8WXK4 309 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 MS4A4EQ96PG1 132 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 SAP130Q9H0E3 1048 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 ACTR10Q9NZ32 417 aa18.77■□□□□ 0.6
VPS53-201ENST00000291074 TDRD6O60522 2096 aaKnown RBP18.77■□□□□ 0.59
VPS53-201ENST00000291074 MYL12BO14950 172 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 EFNB1P98172 346 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 CBX3Q13185 183 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 KIR2DS3Q14952 304 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 TRAM2Q15035 370 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 DUSP5Q16690 384 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 OR4K14Q8NGD5 310 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 RPLP0P6Q8NHW5 317 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 SLC22A18Q96BI1 424 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 EVA1BQ9NVM1 165 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 SCML1Q9UN30 329 aa18.77■□□□□ 0.59
VPS53-201ENST00000291074 GON4LQ3T8J9 2241 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 TAF4O00268 1085 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 CTDSP2O14595 271 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 PIP5K1CO60331 668 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 APBB3O95704 486 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 SMIM10L1P0DMW3 83 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 PORP16435 677 aaPredicted RBP18.76■□□□□ 0.59
VPS53-201ENST00000291074 GPR4P46093 362 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 LSSP48449 732 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 SUZ12Q15022 739 aaKnown RBP18.76■□□□□ 0.59
VPS53-201ENST00000291074 TRMT12Q53H54 448 aaKnown RBP18.76■□□□□ 0.59
VPS53-201ENST00000291074 HEPHL1Q6MZM0 1159 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 SHFQ7M4L6 423 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 CADM3Q8N126 398 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 SMIM10Q96HG1 83 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 ASPNQ9BXN1 380 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 TCEAL2Q9H3H9 227 aaPredicted RBP18.76■□□□□ 0.59
VPS53-201ENST00000291074 CALML5Q9NZT1 146 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 ZNF229Q9UJW7 825 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 DAPP1Q9UN19 280 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 PNMA8CA0A1B0GUJ8 204 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 LDB3O75112 727 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 UBXN7O94888 489 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 CH25HO95992 272 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 GSTM3P21266 225 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 FLYWCH1Q4VC44 716 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 SLC27A4Q6P1M0 643 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 PLEKHM3Q6ZWE6 761 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 TRIM48Q8IWZ4 208 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 GNPDA2Q8TDQ7 276 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 SERINC2Q96SA4 455 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 NUAK2Q9H093 628 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 TESQ9UGI8 421 aaKnown RBP18.76■□□□□ 0.59
VPS53-201ENST00000291074 PHF11Q9UIL8 331 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 CFL2Q9Y281 166 aa18.76■□□□□ 0.59
VPS53-201ENST00000291074 ZNF443Q9Y2A4 671 aaPredicted RBP18.76■□□□□ 0.59
VPS53-201ENST00000291074 B3GALT2O43825 422 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 RAB36O95755 333 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 ACP2P11117 423 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 SOX6P35712 828 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 RPS19P39019 145 aaKnown RBP18.75■□□□□ 0.59
VPS53-201ENST00000291074 CRYBB2P43320 205 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 OMPP47874 163 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 GAS1P54826 345 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 ST3GAL3Q11203 375 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 PUS10Q3MIT2 529 aaKnown RBP18.75■□□□□ 0.59
VPS53-201ENST00000291074 TYW3Q6IPR3 259 aaKnown RBP18.75■□□□□ 0.59
VPS53-201ENST00000291074 CDC73Q6P1J9 531 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 PROKR2Q8NFJ6 384 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms