RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 Q8N9G6 341 aaPredicted RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 B3GNT7Q8NFL0 401 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 DOK4Q8TEW6 326 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 ASB11Q8WXH4 323 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 PRELID1Q9Y255 219 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 C7orf72A4D263 438 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 MROH6A6NGR9 719 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 PHYHO14832 338 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 BMPR1AP36894 532 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 CLRN1P58418 232 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 TBCEQ15813 527 aaPredicted RBP10.19□□□□□ -0.78
CD44-201ENST00000263398 INAVAQ3KP66 663 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 COQ8AQ8NI60 647 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 PINK1Q9BXM7 581 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 OR51E2Q9H255 320 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 TAS2R3Q9NYW6 316 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 IL20RAQ9UHF4 553 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 ASB4Q9Y574 426 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 ANKRD36CQ5JPF3 1778 aa10.19□□□□□ -0.78
CD44-201ENST00000263398 KRBA1A5PL33 1030 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 AGAP5A6NIR3 686 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 M0R036 132 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 TRAPPC6AO75865 159 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 AOAHP28039 575 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 AGTR1P30556 359 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 HTR3DQ70Z44 454 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 TMPRSS9Q7Z410 1059 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 HSD11B1LQ7Z5J1 315 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 LSM14AQ8ND56 463 aaKnown RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 MZB1Q8WU39 189 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 SLAMF8Q9P0V8 285 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 PCDHA9Q9Y5H5 950 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 E2F3O00716 465 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 POLR1CO15160 346 aaPredicted RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 GPR39O43194 453 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ALPLP05186 524 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 HMGN2P05204 90 aaKnown RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 SLC5A2P31639 672 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 RNASE10Q5GAN6 216 aaKnown RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 C1orf189Q5VU69 101 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ZNF691Q5VV52 312 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 LIPIQ6XZB0 460 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 PDZD3Q86UT5 571 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 TMEM173Q86WV6 379 aaPredicted RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 OR5T2Q8NGG2 359 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ELP5Q8TE02 316 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 NT5C3BQ969T7 300 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ZFYVE21Q9BQ24 234 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 DEFB126Q9BYW3 111 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 PITHD1Q9GZP4 211 aaPredicted RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 HOXD1Q9GZZ0 328 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 FBRSQ9HAH7 460 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 HHATLQ9HCP6 504 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 IL23AQ9NPF7 189 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 CNIH4Q9P003 139 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 APOBEC3BQ9UH17 382 aaKnown RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 CYP8B1Q9UNU6 501 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 COL4A1P02462 1669 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 JUNDP17535 347 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ACTBP60709 375 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ACTG1P63261 375 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 PLGLB1Q02325 96 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 C1orf94Q6P1W5 598 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ALKAL1Q6UXT8 129 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 DPPA4Q7L190 304 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ALDH16A1Q8IZ83 802 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ZFP90Q8TF47 636 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 ZNF296Q8WUU4 475 aaPredicted RBP10.18□□□□□ -0.78
CD44-201ENST00000263398 BMFQ96LC9 184 aa10.18□□□□□ -0.78
CD44-201ENST00000263398 CLEC3AO75596 197 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 ATE1O95260 518 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 ITGB7P26010 798 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 RGS6P49758 472 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 NTHL1P78549 312 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 RAB40BQ12829 278 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 HNRNPA1L2Q32P51 320 aaKnown RBP10.17□□□□□ -0.78
CD44-201ENST00000263398 CTSL3PQ5NE16 218 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 DPY19L2P1Q6NXN4 242 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 MAMDC2Q7Z304 686 aaPredicted RBP10.17□□□□□ -0.78
CD44-201ENST00000263398 SLC39A11Q8N1S5 342 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 CREB3L4Q8TEY5 395 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 MSANTD3Q96H12 275 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 ALG8Q9BVK2 526 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 ZNF717Q9BY31 904 aaPredicted RBP10.17□□□□□ -0.78
CD44-201ENST00000263398 SLC6A16Q9GZN6 736 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 ZBTB20Q9HC78 741 aaPredicted RBP10.17□□□□□ -0.78
CD44-201ENST00000263398 KLHL9Q9P2J3 617 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 PRSS21Q9Y6M0 314 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 MYH9P35579 1960 aaKnown RBP10.17□□□□□ -0.78
CD44-201ENST00000263398 TCRBV21S2A2A0A5A6 115 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 S100A2P29034 98 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 GRPRP30550 384 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 MC3RP41968 323 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 CTSCP53634 463 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 CTXN1P60606 82 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 GRM7Q14831 915 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 TSC22D1Q15714 1073 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 SFRP4Q6FHJ7 346 aaPredicted RBP10.17□□□□□ -0.78
CD44-201ENST00000263398 TMEM205Q6UW68 189 aa10.17□□□□□ -0.78
CD44-201ENST00000263398 LRRC69Q6ZNQ3 347 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms