RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CBLP22681 906 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 IL4RP24394 825 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 POLR2HP52434 150 aaKnown RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 LYSMD4Q5XG99 296 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TMEM205Q6UW68 189 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 APOOQ9BUR5 198 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 AGAP5A6NIR3 686 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 LHCGRP22888 699 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 DCAF7P61962 342 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 FAM189BP81408 668 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 RSU1Q15404 277 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 RTL6Q6ICC9 239 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 SCD5Q86SK9 330 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 GATSQ8NAP1 163 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 PAPD5Q8NDF8 572 aaKnown RBP18.14■□□□□ 0.5
UPF1-201ENST00000262803 GCDHQ92947 438 aaPredicted RBP18.14■□□□□ 0.5
UPF1-201ENST00000262803 SLC6A16Q9GZN6 736 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 ZNF442Q9H7R0 627 aa18.14■□□□□ 0.5
UPF1-201ENST00000262803 TRBV2A0A0J9YWF9 115 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 CYB5BO43169 146 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 LAMP1P11279 417 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 DEFA5Q01523 94 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 GTDC1Q4AE62 458 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 LETMD1Q6P1Q0 360 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 LANCL3Q6ZV70 420 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 FOXRED2Q8IWF2 684 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 TTC9BQ8N6N2 239 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 RPLP0P6Q8NHW5 317 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 SFXN5Q8TD22 340 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 TIMM29Q9BSF4 260 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 TMEM168Q9H0V1 697 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 SYT4Q9H2B2 425 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 SOX2P48431 317 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 ZNF169Q14929 603 aaPredicted RBP18.14■□□□□ 0.49
UPF1-201ENST00000262803 PAGE3Q5JUK9 113 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 TMEM151BQ8IW70 566 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 UBQLNLQ8IYU4 475 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 EMC3Q9P0I2 261 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 NDUFB2O95178 105 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 FXYD6P3P58550 94 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 SHC2P98077 582 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 C22orf42Q6IC83 251 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 LRR1Q96L50 414 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 PINK1Q9BXM7 581 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 ANKRD60Q9BZ19 345 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 MYH13Q9UKX3 1938 aa18.14■□□□□ 0.49
UPF1-201ENST00000262803 CLCA1A8K7I4 914 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 MITFO75030 526 aaPredicted RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 CDC123O75794 336 aaPredicted RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 ART1P52961 327 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 NFATC3Q12968 1075 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 GRIN2CQ14957 1233 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 KDELC1Q6UW63 502 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 TSPYL5Q86VY4 417 aaPredicted RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 SLC39A11Q8N1S5 342 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 LOC100509620A0A075B734 347 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 GABBR2O75899 941 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 TMPRSS12Q86WS5 348 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 CD93Q9NPY3 652 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 RNF215Q9Y6U7 377 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 ANHXE9PGG2 379 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 EDN1P05305 212 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 APLNRP35414 380 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 RPP30P78346 268 aaKnown RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 MRPS21P82921 87 aaKnown RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 TGFBR3Q03167 851 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 OR8K3Q8NH51 312 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 CD200R1Q8TD46 325 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 CASTOR1Q8WTX7 329 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 PEX11GQ96HA9 241 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 PCDHA9Q9Y5H5 950 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 MBLAC1A4D2B0 266 aaPredicted RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 FAM227AF5H4B4 570 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 ADH6P28332 368 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 GCH1P30793 250 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 FOXA1P55317 472 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 CARD17Q5XLA6 110 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 HTR3DQ70Z44 454 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 ZNF619Q8N2I2 560 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 DTWD1Q8N5C7 304 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 TOX2Q96NM4 488 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 SLC29A1Q99808 456 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 ACTL7AQ9Y615 435 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 ZNF850A8MQ14 1090 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 CD70P32970 193 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 HNRNPA1L2Q32P51 320 aaKnown RBP18.13■□□□□ 0.49
UPF1-201ENST00000262803 S100A7AQ86SG5 101 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 APIPQ96GX9 242 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 LMAN1LQ9HAT1 526 aa18.13■□□□□ 0.49
UPF1-201ENST00000262803 MYH7BA7E2Y1 1941 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 LOC102725191A0A1B0GVB3 256 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 FEZF1A0PJY2 475 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 ACTL6BO94805 426 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 MT-CO2P00403 227 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 PTHP01270 115 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 LRFN4Q6PJG9 635 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 SLC41A3Q96GZ6 507 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 SPIN2AQ99865 258 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 SPIN2BQ9BPZ2 258 aa18.12■□□□□ 0.49
UPF1-201ENST00000262803 UNKLQ9H9P5 680 aaKnown RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms