RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PRR23AA6NEV1 266 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 TRIM77I1YAP6 450 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 AKR7A2O43488 359 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 PCCBP05166 539 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 CFL1P23528 166 aaKnown RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 ITGB7P26010 798 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 PKLRP30613 574 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SSR2P43308 183 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SLC9A3P48764 834 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 CLDN2P57739 230 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 RAB8AP61006 207 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 ST8SIA6P61647 398 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 GPLD1P80108 840 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 TAGLNQ01995 201 aaKnown RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 HYAL1Q12794 435 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 NDUFAF5Q5TEU4 345 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 ANKRD54Q6NXT1 300 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 IL20RBQ6UXL0 311 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 UBE3DQ7Z6J8 389 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 NOXA1Q86UR1 476 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 VRK2Q86Y07 508 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 Q8N402 240 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 TBC1D19Q8N5T2 526 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 OR5H6Q8NGV6 325 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SNX18Q96RF0 628 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 SCN2AQ99250 2005 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 MKRN2Q9H000 416 aaKnown RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 RNF121Q9H920 327 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 B3GAT2Q9NPZ5 323 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 OBP2AQ9NY56 170 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 GDE1Q9NZC3 331 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 DIMT1Q9UNQ2 313 aaKnown RBP9.45□□□□□ -0.9
LIG3-201ENST00000262327 ICKQ9UPZ9 632 aa9.45□□□□□ -0.9
LIG3-201ENST00000262327 IQCMA0A1B0GVH7 501 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 ARRDC5A6NEK1 342 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 HYAL3O43820 417 aaPredicted RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 HMGN2P05204 90 aaKnown RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 SLC2A2P11168 524 aaPredicted RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 CPEP16870 476 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 GPR4P46093 362 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 CTBP2P56545 445 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 PCBP4P57723 403 aaKnown RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 TAS2R41P59536 307 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 QPRTQ15274 297 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 TATDN3Q17R31 274 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 FNDC3BQ53EP0 1204 aaKnown RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 PIP5KL1Q5T9C9 394 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 TMEM107Q6UX40 140 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 ZNF793Q6ZN11 406 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 MARCH9Q86YJ5 346 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 VWA5B2Q8N398 1253 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 YIPF7Q8N8F6 280 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 OR8K5Q8NH50 307 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 SETD6Q8TBK2 473 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 ZBED6CLQ96FA7 236 aaPredicted RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 BBS4Q96RK4 519 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 AIF1LQ9BQI0 150 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 OR52A5Q9H2C5 316 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 ATP13A2Q9NQ11 1180 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 RPRD1BQ9NQG5 326 aaKnown RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 P2RX2Q9UBL9 471 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 TESQ9UGI8 421 aaKnown RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 CLCA2Q9UQC9 943 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 A0A1W2PQ72 361 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 FAM170BA6NMN3 283 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 SLC30A4O14863 429 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 NDUFS4O43181 175 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 LIMS3P0CW19 117 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 LIMS4P0CW20 117 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 ICAM2P13598 275 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 GNSP15586 552 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 ATP6V1E1P36543 226 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 VIPR2P41587 438 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 OR3A3P47888 321 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 MTNR1AP48039 350 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 CLCNKAP51800 687 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 FUT5Q11128 374 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 LRRC32Q14392 662 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 OCLNQ16625 522 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 SLC35F1Q5T1Q4 408 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 TRIQKQ629K1 86 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 FAM122CQ6P4D5 195 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 XKRXQ6PP77 449 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 IKBIPQ70UQ0 350 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 FAM26EQ8N5C1 309 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 MORN4Q8NDC4 146 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 UBE2E3Q969T4 207 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 RNF170Q96K19 258 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 FAM83CQ9BQN1 747 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 POLDIP3Q9BY77 421 aaKnown RBP9.44□□□□□ -0.9
LIG3-201ENST00000262327 AICDAQ9GZX7 198 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 PRO3102Q9H379 93 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 IGFLR1Q9H665 355 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 TRPV4Q9HBA0 871 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 CSNK1G3Q9Y6M4 447 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 SPEGQ15772 3267 aa9.44□□□□□ -0.9
LIG3-201ENST00000262327 PLXNA2O75051 1894 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 C12orf71A8MTZ7 269 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 C4orf51C9J302 202 aa9.43□□□□□ -0.9
LIG3-201ENST00000262327 PDE9AO76083 593 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms