RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RDH14Q9HBH5 336 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 HSFX1Q9UBD0 423 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF225Q9UK10 706 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NDRG4Q9ULP0 352 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 HMSDA8MTL9 139 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PIAS1O75925 651 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 JTBO76095 146 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 DIRAS1O95057 198 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CPN1P15169 458 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF30P17039 623 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 MAN2A2P49641 1150 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF41P51814 821 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PLA2G7Q13093 441 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ILKQ13418 452 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 MTFR2Q6P444 385 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GOLGA7Q7Z5G4 137 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 POGLUT1Q8NBL1 392 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 FBXO15Q8NCQ5 510 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHA9Q9Y5H5 950 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GPR45Q9Y5Y3 372 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF705FA8MVS1 300 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF705DP0CH99 300 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF705BP0CI00 300 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ATP5A1P25705 553 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CHRNA4P43681 627 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TNFRSF17Q02223 184 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PRKCZQ05513 592 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GGTA1PQ4G0N0 100 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SMUG1Q53HV7 270 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PRAMEF8Q5VWM4 474 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PRAMEF7Q5VXH5 474 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ALG1LQ6GMV1 187 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ABHD15Q6UXT9 468 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 KCTD9Q7L273 389 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM151AQ8N4L1 468 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 AKR7LQ8NHP1 331 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ASB17Q8WXJ9 295 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PDLIM5Q96HC4 596 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NOL4LQ96MY1 436 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CCNL2Q96S94 520 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 BTBD2Q9BX70 525 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TDRD3Q9H7E2 651 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ACSS2Q9NR19 701 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 INIPQ9NRY2 104 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SEMA4GQ9NTN9 838 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 OR10H1Q9Y4A9 318 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SPATA31A5Q5VU36 1347 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SPATA31A7Q8IWB4 1347 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TCRBV7S3A2A0A539 114 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GABARAPH6UMI1 98 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 IRAK2O43187 625 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CYP17A1P05093 508 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SPP1P10451 314 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CSF2RAP15509 400 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SYN1P17600 705 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 STK19P49842 368 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 EPHB3P54753 998 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 F2RL1P55085 397 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TAS2R46P59540 309 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 UBE2KP61086 200 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GPR139Q6DWJ6 353 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PHYKPLQ8IUZ5 450 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CELF2-AS1Q8N7Q2 184 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 DCUN1D4Q92564 292 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ARMC5Q96C12 935 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PRAP1Q96NZ9 151 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 LYSMD1Q96S90 227 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ABHD14A-ACY1A0A1B0GW23 586 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 OR10H2O60403 315 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 USP17L7P0C7H9 530 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ALAS2P22557 587 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GIFP27352 417 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SLC51AQ86UW1 340 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TEX26Q8N6G2 289 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 LINC00469Q8N7U9 141 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZBTB44Q8NCP5 570 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 BBS1Q8NFJ9 593 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 RERGQ96A58 199 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SENP8Q96LD8 212 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SLC17A6Q9P2U8 582 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 OR5K3A6NET4 321 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TRABD2BA6NFA1 517 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TTLL8A6PVC2 850 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF208O43345 1280 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NCR1O76036 304 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 RECQL4O94761 1208 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 BPIP17213 487 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PTPN6P29350 595 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 HSD11B2P80365 405 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GANABQ14697 944 aaKnown RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SLC17A1Q14916 467 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PAQR3Q6TCH7 311 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF704Q6ZNC4 412 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ACOT7LQ6ZUV0 252 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 MAL2Q969L2 176 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ATG4CQ96DT6 458 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 C7orf34Q96L11 122 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 FGFBP2Q9BYJ0 223 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 NRCAMQ92823 1304 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 FAM221BA6H8Z2 402 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms