RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF254O75437 659 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SCRG1O75711 98 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 AKAP3O75969 853 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 STK17BO94768 372 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLU7O95391 586 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 NUDT14O95848 222 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ACTL6AO96019 429 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 IGHV3-48P01763 117 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CXCL10P02778 98 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SEMG1P04279 462 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 APOA4P06727 396 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CD55P08174 381 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 STSP08842 583 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZCCHC18P0CG32 403 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 UROSP10746 265 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 HSD17B1P14061 328 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EZRP15311 586 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF44P15621 663 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CD1EP15812 388 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 IGLL1P15814 213 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PSMB1P20618 241 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 PTBP1P26599 531 aaKnown RBP eCLIP0.23□□□□□ -2.37
VPS35-212ENST00000640313 PPP2R1BP30154 601 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PRKAR2BP31323 418 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 OTX2P32243 289 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RFC2P35250 354 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TCF7P36402 384 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 RPL4P36578 427 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 CTRLP40313 264 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CASP3P42574 277 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PITPNBP48739 271 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NPY2RP49146 381 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SERPINH1P50454 418 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 GEMP55040 296 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SNU13P55769 128 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 KCNK10P57789 538 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NLRP11P59045 1033 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 RPS6P62753 249 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 KRT83P78385 493 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CDKL1Q00532 357 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 OTUD4Q01804 1114 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 OC90Q02509 493 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLC34A1Q06495 639 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 FUT7Q11130 342 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZP4Q12836 540 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EIF4EBP1Q13541 118 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 MOBPQ13875 183 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DPYSQ14117 519 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LASP1Q14847 261 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 GPNMBQ14956 572 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLMAPQ14BN4 828 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 HFEQ30201 348 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 KRTAP6-3Q3LI67 103 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LRIT3Q3SXY7 679 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SLC39A12Q504Y0 691 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 GPAT3Q53EU6 434 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 OR2B11Q5JQS5 317 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PAGE2BQ5JRK9 111 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 GLRA4Q5JXX5 417 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CCDC158Q5M9N0 1113 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TCHHL1Q5QJ38 904 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 CELF3Q5SZQ8 465 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 HECTD3Q5T447 861 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LGSNQ5TDP6 509 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF691Q5VV52 312 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PRAMEF7Q5VXH5 474 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NKAIN2Q5VXU1 208 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PVRIGQ6DKI7 326 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RTL6Q6ICC9 239 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 IRGCQ6NXR0 463 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TATDN1Q6P1N9 297 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PNCKQ6P2M8 343 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NEK5Q6P3R8 708 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TMEM270Q6UE05 265 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PET117Q6UWS5 81 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 APOOLQ6UXV4 268 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 DLEU7Q6UYE1 221 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 B3GLCTQ6Y288 498 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 STAC2Q6ZMT1 411 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TIFABQ6ZNK6 161 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ASRGL1Q7L266 308 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 KCTD9Q7L273 389 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 MOB1BQ7L9L4 216 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LUZP1Q86V48 1076 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF410Q86VK4 478 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RANBP3LQ86VV4 465 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 PARGQ86W56 976 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SERPINA9Q86WD7 417 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 VSIG1Q86XK7 387 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TMEM126BQ8IUX1 230 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ERI1Q8IV48 349 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF547Q8IVP9 402 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SERPINA12Q8IW75 414 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TUSC5Q8IXB3 177 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 MKXQ8IYA7 352 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LINC00518Q8N0U6 118 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 THEM5Q8N1Q8 247 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 CARNMT1Q8N4J0 409 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ARFGAP2Q8N6H7 521 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SUMF2Q8NBJ7 301 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms