RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ACTRT2Q8TDY3 377 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 CKAP2Q8WWK9 683 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 TMCO6Q96DC7 493 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 MAELQ96JY0 434 aaKnown RBP19.02■□□□□ 0.64
CLN3-240ENST00000631023 MAGEB18Q96M61 343 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 COL21A1Q96P44 957 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 TTTY12Q9BZ98 90 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 NEUROD4Q9HD90 331 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 Q9N2J8 555 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 SLCO1B3Q9NPD5 702 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 TUBA8Q9NY65 449 aaPredicted RBP19.02■□□□□ 0.64
CLN3-240ENST00000631023 OSGIN2Q9Y236 505 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 SNX8Q9Y5X2 465 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 NCKAP5O14513 1909 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 DOPEY2Q9Y3R5 2298 aa19.02■□□□□ 0.64
CLN3-240ENST00000631023 PINLYPA6NC86 204 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 CFLARO15519 480 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 HS6ST1O60243 411 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 TGDSO95455 350 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 IL12BP29460 328 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 PSG6Q00889 435 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 EFR3AQ14156 821 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 DPY19L1Q2PZI1 675 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 TMEM198Q66K66 360 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 PAOXQ6QHF9 649 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 NPSR1Q6W5P4 371 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 PACS2Q86VP3 889 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 VPS37AQ8NEZ2 397 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 OR8J2Q8NGG1 315 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 TESCQ96BS2 214 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 LMF2Q9BU23 707 aaKnown RBP19.02■□□□□ 0.63
CLN3-240ENST00000631023 METTL7AQ9H8H3 244 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 EQTNQ9NQ60 294 aa19.02■□□□□ 0.63
CLN3-240ENST00000631023 MRTO4Q9UKD2 239 aaKnown RBP19.02■□□□□ 0.63
CLN3-240ENST00000631023 PCNX1Q96RV3 2341 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 DIAPH2O60879 1101 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 GLSO94925 669 aaPredicted RBP19.01■□□□□ 0.63
CLN3-240ENST00000631023 ALDOCP09972 364 aaKnown RBP19.01■□□□□ 0.63
CLN3-240ENST00000631023 IDO1P14902 403 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 CASP3P42574 277 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 KIR3DL1P43629 444 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 PNLIPRP2P54317 469 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 FOXO1Q12778 655 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 HYAL4Q2M3T9 481 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 SLC9B1Q4ZJI4 515 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 ZCCHC12Q6PEW1 402 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 FAM26EQ8N5C1 309 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 CDRT4Q8N9R6 151 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 PSMA8Q8TAA3 256 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 NUDT8Q8WV74 236 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 SLC35A4Q96G79 324 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 MS4A4EQ96PG1 132 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 ANGPTL4Q9BY76 406 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 PROK2Q9HC23 129 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 ZFP64Q9NPA5 681 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 AIG1Q9NVV5 245 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 PCDHGB4Q9UN71 923 aa19.01■□□□□ 0.63
CLN3-240ENST00000631023 LRRK2Q5S007 2527 aa19■□□□□ 0.63
CLN3-240ENST00000631023 FAM166BA8MTA8 275 aa19■□□□□ 0.63
CLN3-240ENST00000631023 ZNF195O14628 629 aa19■□□□□ 0.63
CLN3-240ENST00000631023 ANKRD28O15084 1053 aa19■□□□□ 0.63
CLN3-240ENST00000631023 TSPAN2O60636 221 aa19■□□□□ 0.63
CLN3-240ENST00000631023 UGT2B11O75310 529 aa19■□□□□ 0.63
CLN3-240ENST00000631023 C6orf47O95873 294 aa19■□□□□ 0.63
CLN3-240ENST00000631023 SNTA1Q13424 505 aa19■□□□□ 0.63
CLN3-240ENST00000631023 GAB1Q13480 694 aa19■□□□□ 0.63
CLN3-240ENST00000631023 DECR1Q16698 335 aa19■□□□□ 0.63
CLN3-240ENST00000631023 ANXA8L1Q5VT79 327 aa19■□□□□ 0.63
CLN3-240ENST00000631023 TMEM81Q6P7N7 255 aa19■□□□□ 0.63
CLN3-240ENST00000631023 EPGNQ6UW88 154 aa19■□□□□ 0.63
CLN3-240ENST00000631023 ACAD11Q709F0 780 aa19■□□□□ 0.63
CLN3-240ENST00000631023 MAVSQ7Z434 540 aa19■□□□□ 0.63
CLN3-240ENST00000631023 HGDQ93099 445 aa19■□□□□ 0.63
CLN3-240ENST00000631023 MOAP1Q96BY2 351 aa19■□□□□ 0.63
CLN3-240ENST00000631023 JSRP1Q96MG2 331 aaPredicted RBP19■□□□□ 0.63
CLN3-240ENST00000631023 RILPQ96NA2 401 aa19■□□□□ 0.63
CLN3-240ENST00000631023 ADOQ96SZ5 270 aa19■□□□□ 0.63
CLN3-240ENST00000631023 SIRT3Q9NTG7 399 aaPredicted RBP19■□□□□ 0.63
CLN3-240ENST00000631023 ZCCHC3Q9NUD5 404 aaKnown RBP19■□□□□ 0.63
CLN3-240ENST00000631023 B4GALT7Q9UBV7 327 aa19■□□□□ 0.63
CLN3-240ENST00000631023 CBLCQ9ULV8 474 aa19■□□□□ 0.63
CLN3-240ENST00000631023 RNASET2O00584 256 aaKnown RBP18.99■□□□□ 0.63
CLN3-240ENST00000631023 WISP2O76076 250 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 GABRA3P34903 492 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 MASP1P48740 699 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 CCT3P49368 545 aaKnown RBP18.99■□□□□ 0.63
CLN3-240ENST00000631023 PSMD4P55036 377 aaKnown RBP18.99■□□□□ 0.63
CLN3-240ENST00000631023 CASP6P55212 293 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 UBAP2LQ14157 1087 aaKnown RBP18.99■□□□□ 0.63
CLN3-240ENST00000631023 SPDYE7PQ495Y7 208 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 OR4F3Q6IEY1 312 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 SLC30A6Q6NXT4 461 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 FAM109AQ8N4B1 249 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 ARFGAP2Q8N6H7 521 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 OR4N2Q8NGD1 307 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 OR52N2Q8NGI0 321 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 GPR151Q8TDV0 419 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 FAM120BQ96EK7 910 aaKnown RBP18.99■□□□□ 0.63
CLN3-240ENST00000631023 ZNF597Q96LX8 424 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 ZBTB18Q99592 522 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms