RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 STX1AQ16623 288 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ANKRD20A4Q4UJ75 823 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ANKRD20A8PQ5CZ79 823 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 TCHHL1Q5QJ38 904 aaPredicted RBP1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ANKRD20A2Q5SQ80 823 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ANKRD20A1Q5TYW2 823 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ANKRD20A3Q5VUR7 823 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 RTL6Q6ICC9 239 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 CD164L2Q6UWJ8 174 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ADAMTSL5Q6ZMM2 481 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 GBP6Q6ZN66 633 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 GPR142Q7Z601 462 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 LRP11Q86VZ4 500 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ZNF547Q8IVP9 402 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 NUP93Q8N1F7 819 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 RNF182Q8N6D2 247 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 OR4L1Q8NH43 312 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 NEIL3Q8TAT5 605 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 UBTD2Q8WUN7 234 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 DEDD2Q8WXF8 326 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 HAS2Q92819 552 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 TEKT1Q969V4 418 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 CAPNS2Q96L46 248 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 IL4I1Q96RQ9 567 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 ACPTQ9BZG2 426 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 CENPMQ9NSP4 180 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 STOX2Q9P2F5 926 aaPredicted RBP1.43□□□□□ -2.18
SCN1A-208ENST00000625916 DNAJB9Q9UBS3 223 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 TUBGCP4Q9UGJ1 667 aa1.43□□□□□ -2.18
SCN1A-208ENST00000625916 KIF7Q2M1P5 1343 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 A0A0A6YYD4 124 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 MED6O75586 246 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 TXNDC12O95881 172 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 HSP90AB1P08238 724 aaKnown RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 OAS2P29728 719 aaKnown RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 TKTL1P51854 596 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 SUCLG1P53597 346 aaKnown RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 GEMP55040 296 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 HAGHQ16775 308 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 SHROOM1Q2M3G4 852 aaPredicted RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 ZNF789Q5FWF6 425 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 EOGTQ5NDL2 527 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 RDH11Q8TC12 318 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 DCUN1D4Q92564 292 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 COG3Q96JB2 828 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 ZMAT2Q96NC0 199 aaKnown RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 NTMT1Q9BV86 223 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 FUNDC2Q9BWH2 189 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 GPR174Q9BXC1 333 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 GANQ9H2C0 597 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 RNPEPL1Q9HAU8 725 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 ZCCHC17Q9NP64 241 aaKnown RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 TERF2IPQ9NYB0 399 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 VPS54Q9P1Q0 977 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 DIMT1Q9UNQ2 313 aaKnown RBP1.42□□□□□ -2.18
SCN1A-208ENST00000625916 PARD3Q8TEW0 1356 aa1.42□□□□□ -2.18
SCN1A-208ENST00000625916 RLFQ13129 1914 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 FBN1P35555 2871 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 IGLV4-69A0A075B6H9 119 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 TMEM110-MUSTN1A8MSY1 372 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 CYB561D2O14569 222 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 EI24O14681 340 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 TIMM44O43615 452 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 STX6O43752 255 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 BBOX1O75936 387 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 PDE5AO76074 875 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 OAS1P00973 400 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 GHRP10912 638 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 CYP3A5P20815 502 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 MAGP20916 626 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 SAA4P35542 130 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 TRIM23P36406 574 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ACADSBP45954 432 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 POU3F4P49335 361 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 VCPP55072 806 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 SNU13P55769 128 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 KRTAP12-3P60328 96 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 RPS4XP62701 263 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 KLF5Q13887 457 aaPredicted RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ELAVL3Q14576 367 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 CD226Q15762 336 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 STXBP2Q15833 593 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ZIC1Q15915 447 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 MEP1BQ16820 701 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 HKDC1Q2TB90 917 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 KBTBD12Q3ZCT8 623 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 KCTD11Q693B1 232 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 CDC42EP5Q6NZY7 148 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ASRGL1Q7L266 308 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 TMEM110Q86TL2 294 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 LINC01551Q86U37 167 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ZNF100Q8IYN0 542 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 OR8H3Q8N146 312 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 SIDT2Q8NBJ9 832 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 GLYATL1Q969I3 302 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 FAM46BQ96A09 425 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 CFAP36Q96G28 342 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 RPGRIP1Q96KN7 1286 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ZNF670Q9BS34 389 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms