RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 SUV39H2Q9H5I1 410 aa13.29□□□□□ -0.28
LDB3-209ENST00000623056 CBLCQ9ULV8 474 aa13.29□□□□□ -0.28
LDB3-209ENST00000623056 CLEC4EQ9ULY5 219 aa13.29□□□□□ -0.28
LDB3-209ENST00000623056 PPIL1Q9Y3C6 166 aa13.29□□□□□ -0.28
LDB3-209ENST00000623056 NUBP2Q9Y5Y2 271 aa13.29□□□□□ -0.28
LDB3-209ENST00000623056 CHST10O43529 356 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SLC28A2O43868 658 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 EFCAB14O75071 495 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 UBXN7O94888 489 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 TCRBP04435 133 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 NPPBP16860 134 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 PITPNBP48739 271 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SLC11A1P49279 550 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 CDH11P55287 796 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 RAB14P61106 215 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 PUDPQ08623 228 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 PLD1Q13393 1074 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 FAM26DQ5JW98 314 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 KIAA1324Q6UXG2 1013 aaKnown RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 IKBIPQ70UQ0 350 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 MRGPREQ86SM8 312 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 OAFQ86UD1 273 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 LRRC56Q8IYG6 542 aaPredicted RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 KLHL36Q8N4N3 616 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SAMD12Q8N8I0 201 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 ADAMTS19Q8TE59 1207 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 RBPMSQ93062 196 aaKnown RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 PMEPA1Q969W9 287 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 NXPE2Q96DL1 559 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 MS4A3Q96HJ5 214 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 TREX2Q9BQ50 279 aaPredicted RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 ZNF649Q9BS31 505 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 CTPS2Q9NRF8 586 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 KCMF1Q9P0J7 381 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 ZFR2Q9UPR6 939 aaKnown RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 FKBP7Q9Y680 259 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 MEIKINA0A087WXM9 373 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 GPR171O14626 319 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SLC9A3R1O14745 358 aaPredicted RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 MMP20O60882 483 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 GSTM3P21266 225 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 DNASE1P24855 282 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 RBMS1P29558 406 aaKnown RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 RFX3P48380 749 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 GATMP50440 423 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 MANFP55145 182 aaKnown RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 ACSM1Q08AH1 577 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 MAP4K2Q12851 820 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 LMAN2Q12907 356 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 HBMQ6B0K9 141 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 C6orf120Q7Z4R8 191 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 TMEM173Q86WV6 379 aaPredicted RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 KLBQ86Z14 1044 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 LINC00471Q8N535 108 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 TBC1D19Q8N5T2 526 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 ZNF480Q8WV37 535 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SLC38A2Q96QD8 506 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SLC22A12Q96S37 553 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 EFCAB11Q9BUY7 163 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 SMG9Q9H0W8 520 aaKnown RBP13.28□□□□□ -0.28
LDB3-209ENST00000623056 CDCP1Q9H5V8 836 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 RWDD3Q9Y3V2 267 aa13.28□□□□□ -0.28
LDB3-209ENST00000623056 A0A1B0GVI7 797 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 PRAMEF27A3QJZ7 478 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 HRO43593 1189 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 C1GALT1C1LP0DN25 315 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 IL32P24001 234 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 CTSOP43234 321 aaPredicted RBP13.27□□□□□ -0.28
LDB3-209ENST00000623056 MTNR1BP49286 362 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 SNRPD1P62314 119 aaKnown RBP13.27□□□□□ -0.28
LDB3-209ENST00000623056 SP3Q02447 781 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 CRYZQ08257 329 aaKnown RBP13.27□□□□□ -0.28
LDB3-209ENST00000623056 BAMBIQ13145 260 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 SYPL1Q16563 259 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 SLC36A2Q495M3 483 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 CLEC12AQ5QGZ9 265 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 GARNL3Q5VVW2 1013 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 HMGN2P46Q86SG4 172 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 PIAS4Q8N2W9 510 aaPredicted RBP13.27□□□□□ -0.28
LDB3-209ENST00000623056 OR8K5Q8NH50 307 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 OR5P2Q8WZ92 322 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 WDR34Q96EX3 536 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 ABHD1Q96SE0 405 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 DLL4Q9NR61 685 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 DYRK1BQ9Y463 629 aa13.27□□□□□ -0.28
LDB3-209ENST00000623056 GREM1O60565 184 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 SERPINI2O75830 405 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 RGS9O75916 674 aaPredicted RBP13.27□□□□□ -0.29
LDB3-209ENST00000623056 SULT1A3P0DMM9 295 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 SULT1A4P0DMN0 295 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 PDHA2P29803 388 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 CD70P32970 193 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 ACSL1P33121 698 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 THBS2P35442 1172 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 CTSCP53634 463 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 VSX2P58304 361 aaPredicted RBP13.27□□□□□ -0.29
LDB3-209ENST00000623056 TLE2Q04725 743 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 CNTN1Q12860 1018 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 HSPB3Q12988 150 aa13.27□□□□□ -0.29
LDB3-209ENST00000623056 HIST2H2AA3Q6FI13 130 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms