RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TSPAN5P62079 268 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 DHODHQ02127 395 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 IRF8Q02556 426 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 TWF1Q12792 350 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 ELAVL2Q12926 359 aaKnown RBP10.21□□□□□ -0.77
UPF3A-212ENST00000619079 GPR33Q49SQ1 333 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 MINDY4Q4G0A6 757 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 PGBD2Q6P3X8 592 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 CD300LDQ6UXZ3 194 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 HSD17B13Q7Z5P4 300 aaPredicted RBP10.21□□□□□ -0.77
UPF3A-212ENST00000619079 TOMM5Q8N4H5 51 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 OR56B4Q8NH76 319 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 RPLP0P6Q8NHW5 317 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 POF1BQ8WVV4 589 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 RNFT2Q96EX2 444 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 CACNG6Q9BXT2 260 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 GPR62Q9BZJ7 368 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 SPRTNQ9H040 489 aaPredicted RBP10.21□□□□□ -0.77
UPF3A-212ENST00000619079 CRLS1Q9UJA2 301 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 SPATA2Q9UM82 520 aa10.21□□□□□ -0.77
UPF3A-212ENST00000619079 ANKDD1BA6NHY2 528 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 C5orf67F2Z3F1 127 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 RFXAPO00287 272 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 FFAR1O14842 300 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 LANCL1O43813 399 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 GMDSO60547 372 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 PRAF2O60831 178 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 ITGA10O75578 1167 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 F11P03951 625 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 FGF2P09038 288 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 TYMPP19971 482 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 MTNR1AP48039 350 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 SMSP52788 366 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 HBA1P69905 142 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 SP140Q13342 867 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 GNA13Q14344 377 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 C10orf120Q5SQS8 335 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 BTN2A1Q7KYR7 527 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 EIF4E3Q8N5X7 224 aaKnown RBP10.21□□□□□ -0.78
UPF3A-212ENST00000619079 WDR48Q8TAF3 677 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 TMED9Q9BVK6 235 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 BRD7Q9NPI1 651 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 HPF1Q9NWY4 346 aa10.21□□□□□ -0.78
UPF3A-212ENST00000619079 NLRC5Q86WI3 1866 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 MTMR11A4FU01 709 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 UPK3BL1B0FP48 263 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 UPK3BL2E5RIL1 263 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 H3BNC9 293 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 TMEM189-UBE2V1I3L0A0 370 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 AIPO00170 330 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 GRM6O15303 877 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 B3GALNT1O75752 331 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 APOL3O95236 402 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 NFATC1O95644 943 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 URODP06132 367 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 IGFBP1P08833 259 aaPredicted RBP10.2□□□□□ -0.78
UPF3A-212ENST00000619079 DRD2P14416 443 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 NPR2P20594 1047 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 RECQLP46063 649 aaPredicted RBP10.2□□□□□ -0.78
UPF3A-212ENST00000619079 GAS1P54826 345 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 CDH4P55283 916 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 LIM2P55344 173 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 TMEM44Q2T9K0 475 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 IDNKQ5T6J7 187 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 SLC22A10Q63ZE4 541 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 REEP3Q6NUK4 255 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 WDR53Q7Z5U6 358 aaPredicted RBP10.2□□□□□ -0.78
UPF3A-212ENST00000619079 SLITRK4Q8IW52 837 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 CMIPQ8IY22 773 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 WDR20Q8TBZ3 569 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 SFXN2Q96NB2 322 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 USB1Q9BQ65 265 aaKnown RBP10.2□□□□□ -0.78
UPF3A-212ENST00000619079 WRAP53Q9BUR4 548 aaKnown RBP10.2□□□□□ -0.78
UPF3A-212ENST00000619079 TBC1D17Q9HA65 648 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 AFF4Q9UHB7 1163 aaKnown RBP10.2□□□□□ -0.78
UPF3A-212ENST00000619079 SLC22A14Q9Y267 594 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 EYSQ5T1H1 3165 aa10.2□□□□□ -0.78
UPF3A-212ENST00000619079 A0A1B0GW55 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GNG14A0A1W2PPG7 69 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SLC16A5O15375 505 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SOD2P04179 222 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 NMBP08949 121 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4L2P0CJ85 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4L3P0CJ86 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4L4P0CJ87 422 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4L5P0CJ88 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4L6P0CJ89 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 DUX4L7P0CJ90 424 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 LIMS3P0CW19 117 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 LIMS4P0CW20 117 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GIFP27352 417 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GIPRP48546 466 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GPR15P49685 360 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 SHC2P98077 582 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PITPNAQ00169 270 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 FOXD4Q12950 439 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-212ENST00000619079 GINS1Q14691 196 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 ST3GAL2Q16842 350 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 PLPP4Q5VZY2 271 aa10.19□□□□□ -0.78
UPF3A-212ENST00000619079 B3GNTL1Q67FW5 361 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms