RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FOXO1Q12778 655 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 LASP1Q14847 261 aaKnown RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 DUSP5Q16690 384 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 SMU1Q2TAY7 513 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 EIF2S3LQ2VIR3 472 aaKnown RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 FNDC7Q5VTL7 733 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 HLA-DQA1Q5Y7H0 255 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 R3HCC1LQ7Z5L2 792 aaKnown RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 CEP70Q8NHQ1 597 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 FAR1Q8WVX9 515 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 ADOQ96SZ5 270 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 KLHDC3Q9BQ90 382 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 ACSS1Q9NUB1 689 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 TUBA8Q9NY65 449 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 A0A087WV62 115 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SYNDIG1LA6NDD5 238 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SLCO1B7G3V0H7 640 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 CFLARO15519 480 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 RASAL1O95294 804 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 RNF224P0DH78 156 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 CD46P15529 392 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 MDH1P40925 334 aaKnown RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 PTGDSP41222 190 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 MAP3K8P41279 467 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 PPICP45877 212 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SEC24CP53992 1094 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 PLCXD2Q0VAA5 305 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 TP53BP2Q13625 1128 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 NTRK2Q16620 822 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 TIGD2Q4W5G0 525 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 CAMKMTQ7Z624 323 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 OR8J2Q8NGG1 315 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SLC9A6Q92581 669 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 ARSGQ96EG1 525 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 C5orf34Q96MH7 638 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SERHLQ9NQF3 203 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SDR39U1Q9NRG7 319 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 ZCCHC3Q9NUD5 404 aaKnown RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 GPATCH2Q9NW75 528 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 TAS2R9Q9NYW1 312 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SLAMF8Q9P0V8 285 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 CNOT11Q9UKZ1 510 aaKnown RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 LIPGQ9Y5X9 500 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 CSMD2Q7Z408 3487 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 LRRC3CA6NJW4 275 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 POLR3GO15318 223 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 VPS4BO75351 444 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 PDE9AO76083 593 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 KIR3DL1P43629 444 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 RPS6KA2Q15349 733 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 OR5M10Q6IEU7 315 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 HPS6Q86YV9 775 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SAMD14Q8IZD0 417 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 OR2M7Q8NG81 312 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SLC22A8Q8TCC7 542 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 PAQR8Q8TEZ7 354 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 JADE3Q92613 823 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 HGDQ93099 445 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 TESCQ96BS2 214 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 AURKBQ96GD4 344 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 ZNF317Q96PQ6 595 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 SLX1AQ9BQ83 275 aa12.38□□□□□ -0.43
LINC00540-202ENST00000616974 BHLHE41Q9C0J9 482 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-202ENST00000616974 INTS1Q8N201 2190 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 MPDZO75970 2070 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NPIPA5A0A0B4J1W7 369 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 FRG2CA6NGY1 282 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NPIPA7E9PJI5 369 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NPIPA5E9PKD4 350 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 DYNC1I1O14576 645 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 ATP8B1O43520 1251 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 PGRP06401 933 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NPIPA8P0DM63 369 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 GABRA3P34903 492 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 SOAT1P35610 550 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 CCT3P49368 545 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 MFSD12Q6NUT3 480 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 FIGNL1Q6PIW4 674 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 OPN5Q6U736 354 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 APOOLQ6UXV4 268 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 SPATA19Q7Z5L4 167 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 HMGN2P46Q86SG4 172 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 SIAH3Q8IW03 269 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 CHERPQ8IWX8 916 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 BCORP1Q8N888 145 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 OR4A15Q8NGL6 344 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 PSMA8Q8TAA3 256 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 PNPT1Q8TCS8 783 aaKnown RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 DIO2Q92813 273 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 TP53INP1Q96A56 240 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 TMEM125Q96AQ2 219 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 RMND5BQ96G75 393 aaPredicted RBP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 TMEM120AQ9BXJ8 343 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 SLC52A3Q9NQ40 469 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 OLAHQ9NV23 265 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.37□□□□□ -0.43
LINC00540-202ENST00000616974 NPIPA1Q9UND3 350 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 ABCA12Q86UK0 2595 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 TSPAN2O60636 221 aa12.37□□□□□ -0.43
LINC00540-202ENST00000616974 ICOSLGO75144 302 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms