RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 EML6Q6ZMW3 1958 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM234BA2RU67 622 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 TTC36A6NLP5 189 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 KLRC4-KLRK1H3BQV0 150 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 PEX1O43933 1283 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 P04436 131 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 ATP4BP51164 291 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 POLR2JP52435 117 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 GPR85P60893 370 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 IRX1P78414 480 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 GAB1Q13480 694 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 TP53BP2Q13625 1128 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SPDYE7PQ495Y7 208 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 EXOSC6Q5RKV6 272 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 ZCCHC12Q6PEW1 402 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 CPSF7Q8N684 471 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM98AQ8NCA5 519 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 OR5AK3PQ8NH89 298 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 GOT1L1Q8NHS2 421 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 FAR1Q8WVX9 515 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 C16orf58Q96GQ5 468 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 FRMD6Q96NE9 622 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SACM1LQ9NTJ5 587 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 GPATCH2Q9NW75 528 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 TRIM33Q9UPN9 1127 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 OR10H1Q9Y4A9 318 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SHANK1Q9Y566 2161 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 A0A0G2JMM0 328 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 A0A1W2PPB8 328 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 A0A1W2PRS3 328 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 KIR3DP1A8MWS1 328 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 G3V3Y1 287 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 TP53I11O14683 189 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 NKX2-2O95096 273 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CPSF4O95639 269 aaKnown RBP15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 NCF2P19878 526 aaPredicted RBP15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CNR1P21554 472 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SOAT1P35610 550 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 MEOX1P50221 254 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 ARFIP2P53365 341 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SF3A3Q12874 501 aaKnown RBP eCLIP15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SQLEQ14534 574 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 LASP1Q14847 261 aaKnown RBP15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 VPS26BQ4G0F5 336 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CYP27C1Q4G0S4 372 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 METTL21CQ5VZV1 264 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 DESI1Q6ICB0 168 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 NUP54Q7Z3B4 507 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CLEC4FQ8N1N0 589 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 FBXW8Q8N3Y1 598 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 BCORP1Q8N888 145 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC16A11Q8NCK7 471 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 DNAJB8Q8NHS0 232 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SPPL2AQ8TCT8 520 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC9A6Q92581 669 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 HGDQ93099 445 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 VPS33AQ96AX1 596 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CHMP6Q96FZ7 201 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 SECISBP2Q96T21 854 aaKnown RBP15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 YIPF4Q9BSR8 244 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 ZNF385DQ9H6B1 395 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 Q9N2J8 555 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CNIH4Q9P003 139 aa15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 CNOT11Q9UKZ1 510 aaKnown RBP15.21■□□□□ 0.03
CCDC28A-202ENST00000611852 OR6C70A6NIJ9 312 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 TSPAN2O60636 221 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 SHOX2O60902 331 aaPredicted RBP15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 UGT2B11O75310 529 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 REM1O75628 298 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 ACP2P11117 423 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 GABRA3P34903 492 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 PIGAP37287 484 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 PRIM2P49643 509 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 LRRC74AQ0VAA2 488 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 RCAN2Q14206 197 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 DUSP5Q16690 384 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 TIGD2Q4W5G0 525 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 PRAMEF20Q5VT98 475 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 ZNF324BQ6AW86 544 aaPredicted RBP15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 BHLHB9Q6PI77 547 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 BLOC1S3Q6QNY0 202 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 FUNDC1Q8IVP5 155 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 ZFP62Q8NB50 900 aaPredicted RBP15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 OR2M7Q8NG81 312 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 FBXO30Q8TB52 745 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 GPR151Q8TDV0 419 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 PIK3R3Q92569 461 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 MIB2Q96AX9 1013 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC35A4Q96G79 324 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 COL21A1Q96P44 957 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 PANX1Q96RD7 426 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 ADOQ96SZ5 270 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 FAM173AQ9BQD7 235 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 INPP5KQ9BT40 448 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 PROK2Q9HC23 129 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 SERHLQ9NQF3 203 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 AGPAT4Q9NRZ5 378 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 TMEM45AQ9NWC5 275 aa15.2■□□□□ 0.02
CCDC28A-202ENST00000611852 CCDC167Q9P0B6 97 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms