RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 TSPAN19P0C672 248 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 PRR35P0CG20 571 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 UGT2B7P16662 529 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 FSHRP23945 695 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ELK3P41970 407 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CDH11P55287 796 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 RPS26P62854 115 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 NPRL3Q12980 569 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MADCAM1Q13477 382 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 HLXQ14774 488 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MLC1Q15049 377 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 DUOXA1Q1HG43 343 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 NKAIN1Q4KMZ8 207 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 OTUD3Q5T2D3 398 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MFSD14CQ5VZR4 134 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 KCTD11Q693B1 232 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 OR8G2PQ6IF36 304 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 VWA1Q6PCB0 445 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 LCLAT1Q6UWP7 414 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SSX6Q7RTT6 188 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CLDN22Q8N7P3 220 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ZNF516Q92618 1163 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 GPKOWQ92917 476 aaPredicted RBP eCLIP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CLP1Q92989 425 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 HIST1H2BAQ96A08 127 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ZNF48Q96MX3 618 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 INTS14Q96SY0 518 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 PARK7Q99497 189 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MTERF1Q99551 399 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ZFYVE21Q9BQ24 234 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 TEX101Q9BY14 249 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SEC11CQ9BY50 192 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 TM6SF2Q9BZW4 377 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 TMEM138Q9NPI0 162 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 DCP1AQ9NPI6 582 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 FBXO34Q9NWN3 711 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 OR52A1Q9UKL2 312 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MRPS2Q9Y399 296 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 DYRK1BQ9Y463 629 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ORC6Q9Y5N6 252 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 A0A1W2PPE3 182 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 HMSDA8MTL9 139 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SEC14L6B5MCN3 397 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 FZD9O00144 591 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 FAM20BO75063 409 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MELTFP08582 738 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 C1GALT1C1LP0DN25 315 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 RAP2AP10114 183 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SLC2A2P11168 524 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 NQO2P16083 231 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 HOXC8P31273 242 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CSF2RBP32927 897 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ALDH3B1P43353 468 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 GPR4P46093 362 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 NOVP48745 357 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 WNT4P56705 351 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 EMX2Q04743 252 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SPIN4Q56A73 249 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 PYDC2Q56P42 97 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 RPUSD3Q6P087 351 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 FBXO42Q6P3S6 717 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 DNAJC24Q6P3W2 148 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 MOB3CQ70IA8 216 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 LDB1Q86U70 411 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 TSPAN33Q86UF1 283 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CFAP206Q8IYR0 622 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CELF5Q8N6W0 485 aaKnown RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 OR8J3Q8NGG0 315 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 CHTF18Q8WVB6 975 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 TIFAQ96CG3 184 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SMIM8Q96KF7 97 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SUCNR1Q9BXA5 334 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 SNHG12Q9BXW3 62 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 PCBD2Q9H0N5 130 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 TREX1Q9NSU2 369 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ZNF629Q9UEG4 869 aaPredicted RBP8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ZDHHC2Q9UIJ5 367 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 PCDHA9Q9Y5H5 950 aa8.38□□□□□ -1.07
COMMD3-215ENST00000602574 ELOA3CA0A087WX78 387 aaPredicted RBP8.37□□□□□ -1.07
COMMD3-215ENST00000602574 SPDYE2BA6NHP3 402 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 FAM171A2A8MVW0 826 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 CCSO14618 274 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 FFAR3O14843 346 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 GPR42O15529 346 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 OR2T1O43869 369 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 MLYCDO95822 493 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 SERPINA1P01009 418 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 CYC1P08574 325 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 OR2T7P0C7T2 308 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 SPDYE6P0CI01 402 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 FGF7P21781 194 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 EPHA8P29322 1005 aaPredicted RBP8.37□□□□□ -1.07
COMMD3-215ENST00000602574 DNAJB13P59910 316 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 MRPS10P82664 201 aaKnown RBP8.37□□□□□ -1.07
COMMD3-215ENST00000602574 NHLH1Q02575 133 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 CHRNB3Q05901 458 aa8.37□□□□□ -1.07
COMMD3-215ENST00000602574 EN1Q05925 392 aaPredicted RBP8.37□□□□□ -1.07
COMMD3-215ENST00000602574 SLBPQ14493 270 aaKnown RBP eCLIP8.37□□□□□ -1.07
COMMD3-215ENST00000602574 FSCN1Q16658 493 aaKnown RBP8.37□□□□□ -1.07
COMMD3-215ENST00000602574 SPDYE2Q495Y8 402 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms