RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 C19orf25Q9UFG5 118 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-211ENST00000595945 DSPPQ9NZW4 1301 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 IGHV3-20A0A0C4DH32 117 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 DHRS12A0PJE2 317 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 A8MVJ9 347 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 C21orf140B9A014 251 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 C5orf58C9J3I9 102 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 SLC28A2O43868 658 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 DXOO77932 396 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 AK1P00568 194 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 GUSBP08236 651 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 NR2F1P10589 423 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 TCN2P20062 427 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 FOLR3P41439 243 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 STAT5AP42229 794 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 CRISP3P54108 245 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 PSG6Q00889 435 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 CAMK2BQ13554 666 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 GNA13Q14344 377 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ARHGAP11BQ3KRB8 267 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 RPS26P11Q5JNZ5 115 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ATAD3BQ5T9A4 648 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 FAM69BQ5VUD6 431 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 FBXW10Q5XX13 1052 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 PAPD4Q6PIY7 484 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ENPP6Q6UWR7 440 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 NPSR1Q6W5P4 371 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 RNF111Q6ZNA4 994 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 EIF3MQ7L2H7 374 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 GALNT10Q86SR1 603 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 NLGN4XQ8N0W4 816 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 FAM86B1Q8N7N1 296 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 NLGN4YQ8NFZ3 816 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 OR1N1Q8NGS0 311 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 FAM110BQ8TC76 370 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ADIPOR1Q96A54 375 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 TAMM41Q96BW9 452 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 RNF145Q96MT1 663 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 BTBD9Q96Q07 612 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 BTBD2Q9BX70 525 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 SLC38A1Q9H2H9 487 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 RNPEPL1Q9HAU8 725 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ASCL3Q9NQ33 180 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 EXD2Q9NVH0 621 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ARMC1Q9NVT9 282 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 NKX1-2Q9UD57 310 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ANAPC2Q9UJX6 822 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 ZNF223Q9UK11 482 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 RPS6KA6Q9UK32 745 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 TCFL5Q9UL49 500 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 CFL2Q9Y281 166 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 FARSAQ9Y285 508 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 GPR55Q9Y2T6 319 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 GPC6Q9Y625 555 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 HS3ST3B1Q9Y662 390 aa13.68□□□□□ -0.22
SHKBP1-211ENST00000595945 A0A0G2JPF8 293 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 GXYLT2A0PJZ3 443 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 TMEM247A6NEH6 219 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 OR6C76A6NM76 312 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 HNRNPCL2B2RXH8 293 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 HNRNPCL3B7ZW38 293 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 M0QX08 132 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 PDE9AO76083 593 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 PRKD3O94806 890 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 ZIC2O95409 532 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 SEMG1P04279 462 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 HNRNPCL4P0DMR1 293 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 CT45A8P0DMV1 189 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 CT45A9P0DMV2 189 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 SDHBP21912 280 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 RBMS1P29558 406 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 GABRA3P34903 492 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 TRHRP34981 398 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 PPICP45877 212 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 POU6F2P78424 691 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 DNASE1L3Q13609 305 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 PCOLCEQ15113 449 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 EBPQ15125 230 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 LRRC23Q53EV4 343 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 CYBRD1Q53TN4 286 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 CT45A2Q5DJT8 189 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 FRRS1Q6ZNA5 592 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 OLIG3Q7RTU3 272 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 SLC44A2Q8IWA5 706 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 C9orf40Q8IXQ3 194 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 COX18Q8N8Q8 333 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 ZNF441Q8N8Z8 693 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 APCDD1LQ8NCL9 501 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 B3GNT7Q8NFL0 401 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 GPR151Q8TDV0 419 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 C8orf44Q96CB5 159 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 SDF2Q99470 211 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 LPAR4Q99677 370 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 TREX2Q9BQ50 279 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 RSPO3Q9BXY4 272 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 ITPAQ9BY32 194 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 NRSN2Q9GZP1 204 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 SAP130Q9H0E3 1048 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 ZNF700Q9H0M5 742 aa13.67□□□□□ -0.22
SHKBP1-211ENST00000595945 CALML5Q9NZT1 146 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms