RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 REEP5Q00765 189 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 LRRC74AQ0VAA2 488 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 SELPLGQ14242 412 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 RNFT1Q5M7Z0 435 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 FIGLAQ6QHK4 219 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 CYP2R1Q6VVX0 501 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 GPR180Q86V85 440 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 CD163Q86VB7 1156 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 CALHM3Q86XJ0 350 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 RNF175Q8N4F7 328 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 C2orf73Q8N5S3 287 aaPredicted RBP11.91□□□□□ -0.5
SCAF1-202ENST00000595242 ABHD11Q8NFV4 315 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 TNIP2Q8NFZ5 429 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 CLHC1Q8NHS4 586 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.91□□□□□ -0.5
SCAF1-202ENST00000595242 CANT1Q8WVQ1 401 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 SMPDL3AQ92484 453 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 POP5Q969H6 163 aaKnown RBP11.91□□□□□ -0.5
SCAF1-202ENST00000595242 ZNF354BQ96LW1 612 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 ZNF583Q96ND8 569 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 IL17FQ96PD4 163 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 TSSK3Q96PN8 268 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 MTERF1Q99551 399 aaKnown RBP11.91□□□□□ -0.5
SCAF1-202ENST00000595242 UTP23Q9BRU9 249 aaKnown RBP11.91□□□□□ -0.5
SCAF1-202ENST00000595242 RHBGQ9H310 441 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 COPS7BQ9H9Q2 264 aaPredicted RBP11.91□□□□□ -0.5
SCAF1-202ENST00000595242 TRPC4Q9UBN4 977 aa11.91□□□□□ -0.5
SCAF1-202ENST00000595242 A0A1B0GTH9 108 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 FAM171A2A8MVW0 826 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 SCAMP2O15127 329 aaKnown RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 KDM1AO60341 852 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 CTSVO60911 334 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 LY6G6DO95868 133 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 SP1P08047 785 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 RPSAP08865 295 aaKnown RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 PCNAP12004 261 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 PKLRP30613 574 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 HSPA13P48723 471 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 GZMMP51124 257 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 WNT3P56703 355 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 OR4D2P58180 307 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 MTPNP58546 118 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 RPS13P62277 151 aaKnown RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 CHD3Q12873 2000 aaKnown RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 SF1Q15637 639 aaKnown RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 FRMPD2BQ6IN97 320 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 ADNP2Q6IQ32 1131 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 HMBOX1Q6NT76 420 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 H3F3CQ6NXT2 135 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 TMEM205Q6UW68 189 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 C17orf64Q86WR6 236 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 KRT78Q8N1N4 520 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 METTL4Q8N3J2 472 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 TMEM132CQ8N3T6 1108 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 RAB42Q8N4Z0 105 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 C1orf52Q8N6N3 182 aaKnown RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 ANKFN1Q8N957 763 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 LMNTD1Q8N9Z9 388 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 LINC01555Q8NAE3 123 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 OR4K1Q8NGD4 311 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 GOT1L1Q8NHS2 421 aaPredicted RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 SLC22A18Q96BI1 424 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 EGLN2Q96KS0 407 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 NR1H4Q96RI1 486 aaPredicted RBP11.9□□□□□ -0.5
SCAF1-202ENST00000595242 SPNS1Q9H2V7 528 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 GORASP2Q9H8Y8 452 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 BATF3Q9NR55 127 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 RASSF1Q9NS23 344 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 EGFL7Q9UHF1 273 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 ATP6V1HQ9UI12 483 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 ARID1AO14497 2285 aa11.9□□□□□ -0.5
SCAF1-202ENST00000595242 EML6Q6ZMW3 1958 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 SEMA3DO95025 777 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 EIF2S1P05198 315 aaKnown RBP11.89□□□□□ -0.51
SCAF1-202ENST00000595242 ZCCHC18P0CG32 403 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 FCGR1AP12314 374 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 BMP2P12643 396 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 CDH1P12830 882 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 UQCRBP14927 111 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 HOXB6P17509 224 aaKnown RBP11.89□□□□□ -0.51
SCAF1-202ENST00000595242 PSMA4P25789 261 aaKnown RBP11.89□□□□□ -0.51
SCAF1-202ENST00000595242 HOXC12P31275 282 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 RPL3P39023 403 aaKnown RBP11.89□□□□□ -0.51
SCAF1-202ENST00000595242 AQP4P55087 323 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 OC90Q02509 493 aaPredicted RBP11.89□□□□□ -0.51
SCAF1-202ENST00000595242 PMPCAQ10713 525 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 DDX39BQ13838 428 aaKnown RBP11.89□□□□□ -0.51
SCAF1-202ENST00000595242 BLMHQ13867 455 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 PDE7AQ13946 482 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 MEP1AQ16819 746 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 DEFB113Q30KQ7 82 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 BTBD16Q32M84 506 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 GRAMD1BQ3KR37 738 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 VN1R5Q7Z5H4 357 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 CDC20BQ86Y33 519 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 RPRMLQ8N4K4 120 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 TRPV3Q8NET8 790 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 OR2L8Q8NGY9 312 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 COQ8BQ96D53 544 aa11.89□□□□□ -0.51
SCAF1-202ENST00000595242 MTERF3Q96E29 417 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms