RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 HYAL4Q2M3T9 481 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 EIF2S3LQ2VIR3 472 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 PGS1Q32NB8 556 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 VPS26BQ4G0F5 336 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 CYP27C1Q4G0S4 372 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 PRAMEF20Q5VT98 475 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 TMEM81Q6P7N7 255 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 CLEC18BQ6UXF7 455 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 NPSR1Q6W5P4 371 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 MAVSQ7Z434 540 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 SLC44A2Q8IWA5 706 aaPredicted RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 GHDCQ8N2G8 530 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 CLEC18CQ8NCF0 446 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 OR8J2Q8NGG1 315 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 CKAP2Q8WWK9 683 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 OR5P2Q8WZ92 322 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 HOXB13Q92826 284 aaPredicted RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 TMBIM1Q969X1 311 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 SLC35A4Q96G79 324 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 MAGED4Q96JG8 741 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 MAGEB18Q96M61 343 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 COL21A1Q96P44 957 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 MS4A4EQ96PG1 132 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 LMF2Q9BU23 707 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 DOHHQ9BU89 302 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 TTTY12Q9BZ98 90 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 TSPAN10Q9H1Z9 355 aaPredicted RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 Q9N2J8 555 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 SLCO1B3Q9NPD5 702 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 AIG1Q9NVV5 245 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 OR10H1Q9Y4A9 318 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 USH1CQ9Y6N9 552 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 USP9YO00507 2555 aaPredicted RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 DOPEY1Q5JWR5 2465 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 MYO7BQ6PIF6 2116 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 UTP20O75691 2785 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 E9PBE3 544 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 RNASET2O00584 256 aaKnown RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 HS6ST1O60243 411 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 DIAPH2O60879 1101 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 UGT2B11O75310 529 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 NME6O75414 186 aaPredicted RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 REM1O75628 298 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 IDO1P14902 403 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 EFNA1P20827 205 aaPredicted RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 IL12BP29460 328 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 KIR3DL1P43629 444 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 PNLIPRP2P54317 469 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 KCNK10P57789 538 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 PPIAP62937 165 aaKnown RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 MRPS22P82650 360 aaKnown RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 SNTA1Q13424 505 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 EFR3AQ14156 821 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 SLC9B1Q4ZJI4 515 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 HSP90B2PQ58FF3 399 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 CMPK2Q5EBM0 449 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 NXNQ6DKJ4 435 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 ZCCHC12Q6PEW1 402 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 EPGNQ6UW88 154 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 SZRD1Q7Z422 152 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 PACS2Q86VP3 889 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 FAM109AQ8N4B1 249 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 FAM26EQ8N5C1 309 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 CDRT4Q8N9R6 151 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 NUP43Q8NFH3 380 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 NUDT8Q8WV74 236 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 HGDQ93099 445 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 MOAP1Q96BY2 351 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 TMCO6Q96DC7 493 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 FAM120BQ96EK7 910 aaKnown RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 ZNF597Q96LX8 424 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 RILPQ96NA2 401 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 ANGPTL4Q9BY76 406 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 METTL7AQ9H8H3 244 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 ZDHHC11Q9H8X9 412 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 PROK2Q9HC23 129 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 ZFP64Q9NPA5 681 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 MED4Q9NPJ6 270 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 EQTNQ9NQ60 294 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 SIRT3Q9NTG7 399 aaPredicted RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 ZCCHC3Q9NUD5 404 aaKnown RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 TUBA8Q9NY65 449 aaPredicted RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 B4GALT7Q9UBV7 327 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 MRTO4Q9UKD2 239 aaKnown RBP10.92□□□□□ -0.66
LIG3-213ENST00000590630 SNX8Q9Y5X2 465 aa10.92□□□□□ -0.66
LIG3-213ENST00000590630 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 FAM166BA8MTA8 275 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 CFLARO15519 480 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 ATP8B1O43520 1251 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 TSPAN2O60636 221 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 SLC19A2O60779 497 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 TRIM3O75382 744 aaPredicted RBP10.91□□□□□ -0.66
LIG3-213ENST00000590630 C6orf47O95873 294 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 STSP08842 583 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 MAP3K8P41279 467 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 CASP3P42574 277 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 CCT3P49368 545 aaKnown RBP10.91□□□□□ -0.66
LIG3-213ENST00000590630 PRKAG1P54619 331 aa10.91□□□□□ -0.66
LIG3-213ENST00000590630 PSMD4P55036 377 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms