RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CSKP41240 450 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 OR3A3P47888 321 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ALDH9A1P49189 494 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 STC1P52823 247 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 WNT3AP56704 352 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 RAB25P57735 213 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TAS2R38P59533 333 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 GPLD1P80108 840 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 B4GALNT1Q00973 533 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TAGLNQ01995 201 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 LAPTM5Q13571 262 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TRA2AQ13595 282 aaKnown RBP eCLIP3.91□□□□□ -1.78
LIG3-211ENST00000588713 IL10RAQ13651 578 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ELAVL3Q14576 367 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 IRF3Q14653 427 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 KCNAB1Q14722 419 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 KIAA0040Q15053 153 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 RBBP7Q16576 425 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 PFKFB4Q16877 469 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 UGT8Q16880 541 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 DEFB113Q30KQ7 82 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TTLL9Q3SXZ7 439 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 BCL7AQ4VC05 210 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 MPPE1Q53F39 396 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ESCO2Q56NI9 601 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 RUNDC3AQ59EK9 446 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZNF789Q5FWF6 425 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TOR2AQ5JU69 321 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 C6orf136Q5SQH8 315 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ARMC4Q5T2S8 1044 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 C10orf62Q5T681 223 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 NDUFAF5Q5TEU4 345 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 RNF219Q5W0B1 726 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 RAP1GAP2Q684P5 730 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 OR2T5Q6IEZ7 315 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 AFTPHQ6ULP2 937 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 FAM180AQ6UWF9 173 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TMEM207Q6UWW9 146 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 GFRALQ6UXV0 394 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 GDPGP1Q6ZNW5 385 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TMEM179BQ7Z7N9 219 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZSWIM9Q86XI8 627 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 P3H2Q8IVL5 708 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZDHHC21Q8IVQ6 265 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ENTHD1Q8IYW4 607 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 SLC22A15Q8IZD6 547 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 SLC38A6Q8IZM9 456 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 HS3ST5Q8IZT8 346 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 RDH10Q8IZV5 341 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TMEM132CQ8N3T6 1108 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 NKAPQ8N5F7 415 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 TTC29Q8NA56 475 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 NETO2Q8NC67 525 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TOR1AIP2Q8NFQ8 470 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 OR2T11Q8NH01 316 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 OR2T29Q8NH02 315 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 SPATA22Q8NHS9 363 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZNF675Q8TD23 568 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 CT55Q8WUE5 264 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 APH1BQ8WW43 257 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TADA1Q96BN2 335 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 AP2M1Q96CW1 435 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 IMP4Q96G21 291 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 PYURFQ96I23 114 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 HRASLS5Q96KN8 279 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 RPL10LQ96L21 214 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 MRGPRX3Q96LB0 322 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 NSUN5Q96P11 429 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 TRNT1Q96Q11 434 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 SDHCQ99643 169 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 SMAD5Q99717 465 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZPBPQ9BS86 351 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 COPS4Q9BT78 406 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ULBP1Q9BZM6 244 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 REXO4Q9GZR2 422 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 SRRQ9GZT4 340 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZDHHC6Q9H6R6 413 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 BRD7Q9NPI1 651 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 SEMA4BQ9NPR2 832 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 CATSPERZQ9NTU4 200 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 EXD2Q9NVH0 621 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 DDIT4Q9NX09 232 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 VNN3Q9NY84 501 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 MRPL39Q9NYK5 338 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 TAS2R13Q9NYV9 303 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 UBP1Q9NZI7 540 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 CNOT2Q9NZN8 540 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 VAPAQ9P0L0 249 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 COX16Q9P0S2 106 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 LRFN1Q9P244 771 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 EIF3KQ9UBQ5 218 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 ENOPH1Q9UHY7 261 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 PSORS1C1Q9UIG5 152 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 PHF11Q9UIL8 331 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 TRMT6Q9UJA5 497 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 IKZF3Q9UKT9 509 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZFR2Q9UPR6 939 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 ITM2BQ9Y287 266 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 MAGED1Q9Y5V3 778 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 HS3ST3A1Q9Y663 406 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms