RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ERLIN1O75477 346 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 LYPLA1O75608 230 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-206ENST00000579558 SERPINE1P05121 402 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 BCKDHAP12694 445 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 MAPK1P28482 360 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 KRT20P35900 424 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 ASMTP46597 345 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 TRPC1P48995 793 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 PSPHP78330 225 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 HSPB3Q12988 150 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 ATP6AP1LQ52LC2 224 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF385BQ569K4 471 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 FNDC7Q5VTL7 733 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 CES4AQ5XG92 561 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 TMEM211Q6ICI0 200 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 SLC30A6Q6NXT4 461 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 LIX1Q8N485 282 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 CIDECQ96AQ7 238 aaPredicted RBP21.87■■□□□ 1.09
SHMT1-206ENST00000579558 ELP4Q96EB1 424 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 KLRF1Q9NZS2 232 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 SH3BP4Q9P0V3 963 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 SPRR3Q9UBC9 169 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 C15orf41Q9Y2V0 281 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 OR10H1Q9Y4A9 318 aa21.87■■□□□ 1.09
SHMT1-206ENST00000579558 PRAMEF25A6NGN4 478 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 TMEM114B3SHH9 223 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 UPK1AO00322 258 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 GNB5O14775 395 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 TBX19O60806 448 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ABCB7O75027 752 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 TRAPPC6AO75865 159 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ZWINTO95229 277 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ENDOUP21128 410 aaKnown RBP21.86■■□□□ 1.09
SHMT1-206ENST00000579558 HTR1EP28566 365 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 IL12BP29460 328 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 SNTA1Q13424 505 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 WLSQ5T9L3 541 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 SP5Q6BEB4 398 aaPredicted RBP21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF585AQ6P3V2 769 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ANGPTL8Q6UXH0 198 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF551Q7Z340 670 aaPredicted RBP21.86■■□□□ 1.09
SHMT1-206ENST00000579558 OR2L13Q8N349 312 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 MARVELD2Q8N4S9 558 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ZFP28Q8NHY6 868 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 NEIL3Q8TAT5 605 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 NTNG2Q96CW9 530 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 TMCO6Q96DC7 493 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 SLC35A4Q96G79 324 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 C3orf30Q96M34 536 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 GNRHR2Q96P88 292 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 ADOQ96SZ5 270 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 GALNT9Q9HCQ5 603 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 NOTCH2Q04721 2471 aa21.86■■□□□ 1.09
SHMT1-206ENST00000579558 FIGNL2A6NMB9 653 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 ITM2AO43736 263 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 TSPAN2O60636 221 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 ICOSLGO75144 302 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 CLDN14O95500 239 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 DHRS4L1P0CG22 281 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 ELAVL4P26378 380 aaKnown RBP21.85■■□□□ 1.09
SHMT1-206ENST00000579558 GRNP28799 593 aaKnown RBP21.85■■□□□ 1.09
SHMT1-206ENST00000579558 GPC1P35052 558 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 PTGDSP41222 190 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 ABCE1P61221 599 aaKnown RBP21.85■■□□□ 1.09
SHMT1-206ENST00000579558 PDE7AQ13946 482 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 EFR3AQ14156 821 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 TIGD3Q6B0B8 471 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 LARP4Q71RC2 724 aaKnown RBP eCLIP21.85■■□□□ 1.09
SHMT1-206ENST00000579558 RPRMLQ8N4K4 120 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 OR1J4Q8NGS1 313 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 SDCCAG3Q96C92 435 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 ZBED6CLQ96FA7 236 aaPredicted RBP21.85■■□□□ 1.09
SHMT1-206ENST00000579558 UBQLN3Q9H347 655 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 COQ3Q9NZJ6 369 aa21.85■■□□□ 1.09
SHMT1-206ENST00000579558 UNC79Q9P2D8 2635 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 C2orf72A6NCS6 295 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 PSMG1O95456 288 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 IFI6P09912 130 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 FREM3P0C091 2139 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 ACVR2AP27037 513 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 HPCAL1P37235 193 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 CDK9P50750 372 aaKnown RBP21.84■■□□□ 1.09
SHMT1-206ENST00000579558 PSG6Q00889 435 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 MPP2Q14168 576 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 TOMM20Q15388 145 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 CDSNQ15517 529 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF630Q2M218 657 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-206ENST00000579558 C6orf136Q5SQH8 315 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 R3HCC1LQ7Z5L2 792 aaKnown RBP21.84■■□□□ 1.09
SHMT1-206ENST00000579558 FNDC5Q8NAU1 212 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 OR4N2Q8NGD1 307 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 TUBGCP3Q96CW5 907 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 MTERF3Q96E29 417 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 C1orf50Q9BV19 199 aa21.84■■□□□ 1.09
SHMT1-206ENST00000579558 ZNF395Q9H8N7 513 aaPredicted RBP21.84■■□□□ 1.09
SHMT1-206ENST00000579558 SNPHO15079 494 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 HPNP05981 417 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 DDX5P17844 614 aaKnown RBP21.83■■□□□ 1.09
SHMT1-206ENST00000579558 PTPN6P29350 595 aa21.83■■□□□ 1.09
SHMT1-206ENST00000579558 MANFP55145 182 aaKnown RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms