RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ANKRA2Q9H9E1 313 aa13.59□□□□□ -0.23
SS18-212ENST00000579061 CHST11Q9NPF2 352 aa13.59□□□□□ -0.23
SS18-212ENST00000579061 ARHGAP21Q5T5U3 1957 aa13.59□□□□□ -0.23
SS18-212ENST00000579061 UPK1AO00322 258 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 WDR1O75083 606 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 UGT2B11O75310 529 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ERLIN1O75477 346 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 REM1O75628 298 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 CLDN14O95500 239 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 SERPINE1P05121 402 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 HPNP05981 417 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 BCKDHAP12694 445 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 GDF1P27539 372 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 KRT20P35900 424 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 RPL3P39023 403 aaKnown RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 MC3RP41968 323 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 PNLIPRP2P54317 469 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 CORO7P57737 925 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 MRPS22P82650 360 aaKnown RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 PSG6Q00889 435 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 EFR3AQ14156 821 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ATP6AP1LQ52LC2 224 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 WLSQ5T9L3 541 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 TIGD3Q6B0B8 471 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 SP5Q6BEB4 398 aaPredicted RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 ZNF787Q6DD87 383 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 TMEM107Q6UX40 140 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 NPSR1Q6W5P4 371 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 C3P1Q6ZMU1 363 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ACAD11Q709F0 780 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 KIRREL3Q8IZU9 778 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 LIX1Q8N485 282 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 PPP1R14CQ8TAE6 165 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 NEIL3Q8TAT5 605 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ASB5Q8WWX0 329 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 GFM2Q969S9 779 aaKnown RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 TMBIM1Q969X1 311 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 PPCDCQ96CD2 204 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ELP4Q96EB1 424 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ZBED6CLQ96FA7 236 aaPredicted RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 TSSK3Q96PN8 268 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 CENPHQ9H3R5 247 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 PNPLA3Q9NST1 481 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ACSS1Q9NUB1 689 aaPredicted RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 DDX18Q9NVP1 670 aaKnown RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 COQ3Q9NZJ6 369 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 ACAD8Q9UKU7 415 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.58□□□□□ -0.24
SS18-212ENST00000579061 C15orf41Q9Y2V0 281 aa13.58□□□□□ -0.24
SS18-212ENST00000579061 PRAMEF25A6NGN4 478 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 SNPHO15079 494 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 ICOSLGO75144 302 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 GABRA1P14867 456 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 ENDOUP21128 410 aaKnown RBP13.57□□□□□ -0.24
SS18-212ENST00000579061 GRK2P25098 689 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 ACVR2AP27037 513 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 HTR1EP28566 365 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 IL12BP29460 328 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 PTGDSP41222 190 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 CDK9P50750 372 aaKnown RBP13.57□□□□□ -0.24
SS18-212ENST00000579061 ZNF155Q12901 538 aaPredicted RBP13.57□□□□□ -0.24
SS18-212ENST00000579061 CYP27C1Q4G0S4 372 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 ZNF385BQ569K4 471 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 C6orf136Q5SQH8 315 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 NCCRP1Q6ZVX7 275 aaPredicted RBP13.57□□□□□ -0.24
SS18-212ENST00000579061 SLC44A2Q8IWA5 706 aaPredicted RBP13.57□□□□□ -0.24
SS18-212ENST00000579061 MARVELD2Q8N4S9 558 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 OR1J4Q8NGS1 313 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 AGR3Q8TD06 166 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 RNF138Q8WVD3 245 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 DTNBP1Q96EV8 351 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 PKNOX2Q96KN3 472 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 SLC6A15Q9H2J7 730 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 KLRF1Q9NZS2 232 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 NTMQ9P121 344 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 SPRR3Q9UBC9 169 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 BAIAP2L1Q9UHR4 511 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 ATP6V1HQ9UI12 483 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 OR10H1Q9Y4A9 318 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 ITPR2Q14571 2701 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 PKDREJQ9NTG1 2253 aa13.57□□□□□ -0.24
SS18-212ENST00000579061 NUP214P35658 2090 aaPredicted RBP13.57□□□□□ -0.24
SS18-212ENST00000579061 HNRNPRO43390 633 aaKnown RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 AKAP10O43572 662 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 PEX11AO75192 247 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 LYPLA1O75608 230 aaPredicted RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 HSPA4LO95757 839 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 PRPS2P11908 318 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 PTPN6P29350 595 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 PTGER4P35408 488 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 ABCE1P61221 599 aaKnown RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 MAD2L1Q13257 205 aaPredicted RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 ZNHIT3Q15649 155 aaPredicted RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 CHI3L2Q15782 390 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 SMU1Q2TAY7 513 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 DESI1Q6ICB0 168 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 ANGPTL8Q6UXH0 198 aa13.56□□□□□ -0.24
SS18-212ENST00000579061 LARP4Q71RC2 724 aaKnown RBP eCLIP13.56□□□□□ -0.24
SS18-212ENST00000579061 ZNF551Q7Z340 670 aaPredicted RBP13.56□□□□□ -0.24
SS18-212ENST00000579061 NATD1Q8N6N6 113 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms