RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZNF639Q9UID6 485 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 CNOT11Q9UKZ1 510 aaKnown RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 OR10H1Q9Y4A9 318 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 KLF2Q9Y5W3 355 aaPredicted RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 CHCHD2Q9Y6H1 151 aaPredicted RBP7.44□□□□□ -1.22
VPS53-214ENST00000572607 HIVEP1P15822 2718 aa7.44□□□□□ -1.22
VPS53-214ENST00000572607 TRGV5A0A0B4J1U4 118 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 FRG2CA6NGY1 282 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 MYO1GB0I1T2 1018 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 NPIPB8E9PQR5 432 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 AQP7O14520 342 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 PIP5K1BO14986 540 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 TM9SF1O15321 606 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 PDPK1O15530 556 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 TYROBPO43914 113 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 HCN1O60741 890 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ERN1O75460 977 aaKnown RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 REM1O75628 298 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 TRAPPC6AO75865 159 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 WISP2O76076 250 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 SNUPNO95149 360 aaKnown RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 ZWINTO95229 277 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 LRATO95237 230 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 CLDN14O95500 239 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 IGHG3P01860 377 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 JUNP05412 331 aaKnown RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 CHRNGP07510 517 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 FGF4P08620 206 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 LINC00032P0C843 101 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 PRF1P14222 555 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 AGAP20933 346 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 S1PR1P21453 382 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 GDF1P27539 372 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ABCD3P28288 659 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 IL12BP29460 328 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 HPCAL1P37235 193 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 RPL3P39023 403 aaKnown RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 ASMTP46597 345 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 SERPINB4P48594 390 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 DUSP2Q05923 314 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 EFR3AQ14156 821 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 TOMM20Q15388 145 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ZNHIT3Q15649 155 aaPredicted RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 CEBPEQ15744 281 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ATP6AP1LQ52LC2 224 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 WLSQ5T9L3 541 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 FAM71E1Q6IPT2 247 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 SLC30A6Q6NXT4 461 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ZNF585AQ6P3V2 769 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 TMEM107Q6UX40 140 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ZCCHC23Q6ZST2 131 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ACAD11Q709F0 780 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 TRILQ7L0X0 811 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 R3HCC1LQ7Z5L2 792 aaKnown RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 KIRREL3Q8IZU9 778 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ITLN2Q8WWU7 325 aaPredicted RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 PPCDCQ96CD2 204 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 RILPQ96NA2 401 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 COL21A1Q96P44 957 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 OSBPL11Q9BXB4 747 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ANGPTL4Q9BY76 406 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 ZNF703Q9H7S9 590 aaPredicted RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 TNFRSF12AQ9NP84 129 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 KCNK9Q9NPC2 374 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 CHST11Q9NPF2 352 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 MRTO4Q9UKD2 239 aaKnown RBP7.43□□□□□ -1.22
VPS53-214ENST00000572607 ACAD8Q9UKU7 415 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 DNAJC15Q9Y5T4 150 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 PTGDR2Q9Y5Y4 395 aa7.43□□□□□ -1.22
VPS53-214ENST00000572607 NF1P21359 2839 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ZGRF1Q86YA3 2104 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 DNHD1Q96M86 4753 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 A0A087WV62 115 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 C15orf38-AP3S2A0A0A6YYH1 394 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 A0A1B0GVC2 190 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 WDR91A4D1P6 747 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 PRAMEF25A6NGN4 478 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 OR6C70A6NIJ9 312 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 LRRC3CA6NJW4 275 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 TMEM233B4DJY2 109 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 FAM47E-STBD1D6RA91 191 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 LSM1O15116 133 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 TO15178 435 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 BIRC5O15392 142 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ZNHIT1O43257 154 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SUSD5O60279 629 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 PLOD3O60568 738 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 WDR1O75083 606 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 TRIM3O75382 744 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 SKAP2O75563 359 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 SERPINE1P05121 402 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ABCB1P08183 1280 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 CREB1P16220 341 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SDC1P18827 310 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ELAVL4P26378 380 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 MC3RP41968 323 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 CASP3P42574 277 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 EMDP50402 254 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 PSMD4P55036 377 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 ADORA2A-AS1P86434 159 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms