RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PRIM2P49643 509 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 CDK9P50750 372 aaKnown RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 DIO3P55073 304 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 CORO7P57737 925 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 PPIAP62937 165 aaKnown RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 DECR1Q16698 335 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 EIF2S3LQ2VIR3 472 aaKnown RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 PGS1Q32NB8 556 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SPDYE7PQ495Y7 208 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 CT45A2Q5DJT8 189 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 ANXA8L1Q5VT79 327 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 TMEM198Q66K66 360 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 TMEM81Q6P7N7 255 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 ZCCHC12Q6PEW1 402 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 BHLHB9Q6PI77 547 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 TMEM64Q6YI46 380 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 ACAD11Q709F0 780 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 PACS2Q86VP3 889 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SIAH3Q8IW03 269 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SLC44A2Q8IWA5 706 aaPredicted RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 RIMKLAQ8IXN7 391 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 EID3Q8N140 333 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 FAM109AQ8N4B1 249 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 KRTCAP2Q8N6L1 136 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 CDRT4Q8N9R6 151 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SIMC1Q8NDZ2 872 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 OR56A1Q8NGH5 318 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SFXN5Q8TD22 340 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 OR5P2Q8WZ92 322 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 TMBIM1Q969X1 311 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 TESCQ96BS2 214 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 COQ8BQ96D53 544 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SLC35A4Q96G79 324 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 MAGEB18Q96M61 343 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 COL21A1Q96P44 957 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 LMF2Q9BU23 707 aaKnown RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 OSBPL11Q9BXB4 747 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 EQTNQ9NQ60 294 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 ZCCHC3Q9NUD5 404 aaKnown RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 AIG1Q9NVV5 245 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 TUBA8Q9NY65 449 aaPredicted RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 CNOT11Q9UKZ1 510 aaKnown RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 PCDHGB4Q9UN71 923 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 SNX8Q9Y5X2 465 aa11.94□□□□□ -0.5
CLK3-224ENST00000568605 NCOA6Q14686 2063 aaPredicted RBP11.94□□□□□ -0.5
CLK3-224ENST00000568605 A0A0G2JMM0 328 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 A0A1B0GUH1 482 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 A0A1W2PPB8 328 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 A0A1W2PRS3 328 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 KIR3DP1A8MWS1 328 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 E9PBE3 544 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 POLR3GO15318 223 aaPredicted RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 ASNA1O43681 348 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 CDC40O60508 579 aaKnown RBP eCLIP11.93□□□□□ -0.5
CLK3-224ENST00000568605 DIAPH2O60879 1101 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 KCNH1O95259 989 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 TGDSO95455 350 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 ABCB1P08183 1280 aaPredicted RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 IDO1P14902 403 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 ELAVL4P26378 380 aaKnown RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 EPHA3P29320 983 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 SOAT1P35610 550 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 PIGAP37287 484 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 PNLIPRP2P54317 469 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 KCNK10P57789 538 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 PSG6Q00889 435 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 SNTA1Q13424 505 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 HYAL4Q2M3T9 481 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 CYP27C1Q4G0S4 372 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 SLC30A6Q6NXT4 461 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 NPSR1Q6W5P4 371 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 NUP43Q8NFH3 380 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 OR8J2Q8NGG1 315 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 ACTRT2Q8TDY3 377 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 JADE3Q92613 823 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 MAELQ96JY0 434 aaKnown RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 JSRP1Q96MG2 331 aaPredicted RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 RILPQ96NA2 401 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 WDR55Q9H6Y2 383 aaPredicted RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 ZNF703Q9H7S9 590 aaPredicted RBP11.93□□□□□ -0.5
CLK3-224ENST00000568605 ZFP64Q9NPA5 681 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 MED4Q9NPJ6 270 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 QPCTLQ9NXS2 382 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 NTMQ9P121 344 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 CBLCQ9ULV8 474 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 OSGIN2Q9Y236 505 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 SLC5A6Q9Y289 635 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 USH1CQ9Y6N9 552 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 PCNX3Q9H6A9 2034 aa11.93□□□□□ -0.5
CLK3-224ENST00000568605 SPTBN1Q01082 2364 aaKnown RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 PTPN13Q12923 2485 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 PINLYPA6NC86 204 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 PRAMEF25A6NGN4 478 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 FAM166BA8MTA8 275 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 RNASET2O00584 256 aaKnown RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 SLC19A2O60779 497 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 UGT2B11O75310 529 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 GLSO94925 669 aaPredicted RBP11.92□□□□□ -0.5
CLK3-224ENST00000568605 SOX30O94993 753 aa11.92□□□□□ -0.5
CLK3-224ENST00000568605 C6orf47O95873 294 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms