RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IFI44LQ53G44 452 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 FAM133BQ5BKY9 247 aaKnown RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 EOGTQ5NDL2 527 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 SPATA46Q5T0L3 261 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 SULT1C3Q6IMI6 304 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 CWC27Q6UX04 472 aaKnown RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 SERPINA12Q8IW75 414 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 GPR65Q8IYL9 337 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 NKAIN3Q8N8D7 197 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 OR52J3Q8NH60 311 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 GDAP1Q8TB36 358 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 ZNF721Q8TF20 911 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 CTRCQ99895 268 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 GLT8D2Q9H1C3 349 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 Q9H3A6 140 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 TSPY26PQ9H489 355 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 PATZ1Q9HBE1 687 aaKnown RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 NRN1Q9NPD7 142 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 EXOSC3Q9NQT5 275 aaKnown RBP1.8□□□□□ -2.12
VPS35-207ENST00000568191 LIPT1Q9Y234 373 aa1.8□□□□□ -2.12
VPS35-207ENST00000568191 IGKV2D-24A0A075B6R9 120 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 A0A0J9YVX5 310 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 TRBV7-9A0A0J9YWB2 115 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 A0A1B0GUA9 196 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 STX6O43752 255 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 RTN2O75298 545 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 MMP23AO75900 390 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 NOL4O94818 638 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 FERP16591 822 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 CTNNB1P35222 781 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 ACVR1BP36896 505 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 PITPNBP48739 271 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 SNU13P55769 128 aaKnown RBP1.79□□□□□ -2.12
VPS35-207ENST00000568191 UCP2P55851 309 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 RAG2P55895 527 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 RPL32P62910 135 aaKnown RBP1.79□□□□□ -2.12
VPS35-207ENST00000568191 BCL2L1Q07817 233 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 PDE7AQ13946 482 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 EXOSC7Q15024 291 aaKnown RBP1.79□□□□□ -2.12
VPS35-207ENST00000568191 CAMK4Q16566 473 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 ZNF674Q2M3X9 581 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 DCAF4L1Q3SXM0 396 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 LGSNQ5TDP6 509 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 CDC42EP5Q6NZY7 148 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 PRSS42Q7Z5A4 293 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 PYROXD2Q8N2H3 581 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 NAT8LQ8N9F0 302 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 SIDT2Q8NBJ9 832 aaKnown RBP1.79□□□□□ -2.12
VPS35-207ENST00000568191 BBS1Q8NFJ9 593 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 OR4F17Q8NGA8 305 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 KIR2DL5BQ8NHK3 375 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 ST7LQ8TDW4 575 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 BCL2L2Q92843 193 aaPredicted RBP1.79□□□□□ -2.12
VPS35-207ENST00000568191 DHTKD1Q96HY7 919 aaPredicted RBP1.79□□□□□ -2.12
VPS35-207ENST00000568191 SMIM14Q96QK8 99 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 OR4F4Q96R69 305 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 TSSK1BQ9BXA7 367 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 FUT8Q9BYC5 575 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 ZWILCHQ9H900 591 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 ACOXLQ9NUZ1 547 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 NDUFA13Q9P0J0 144 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 SLC2A6Q9UGQ3 507 aa1.79□□□□□ -2.12
VPS35-207ENST00000568191 MEGF6O75095 1541 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 NPC1L1Q9UHC9 1359 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 A0A1W2PRQ8 180 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 CCDC69A6NI79 296 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 B4DXG7 233 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 RANBP6O60518 1105 aaKnown RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 TBL1XO60907 577 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 APRTP07741 180 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 HMOX1P09601 288 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 ZCCHC18P0CG32 403 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 MAT2AP31153 395 aaKnown RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 TCF7P36402 384 aaPredicted RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 PPOXP50336 477 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 EFNA3P52797 238 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 NLRP11P59045 1033 aaKnown RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 LINC00315P59091 139 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 IL9RQ01113 521 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 ZNF85Q03923 595 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 EBI3Q14213 229 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 EIF2B1Q14232 305 aaKnown RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 FUT11Q495W5 492 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 AARDQ4LEZ3 155 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 HIST2H2AA3Q6FI13 130 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 TRPM8Q7Z2W7 1104 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 ZNF100Q8IYN0 542 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 CCDC170Q8IYT3 715 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 OR10H4Q8NGA5 316 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 P3H4Q92791 437 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 PTP4A1Q93096 173 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 SPATA13Q96N96 652 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 ALG9Q9H6U8 611 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 MAGEF1Q9HAY2 307 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 ZCCHC3Q9NUD5 404 aaKnown RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 NEU3Q9UQ49 428 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 RPH3AQ9Y2J0 694 aaPredicted RBP1.78□□□□□ -2.12
VPS35-207ENST00000568191 DHRS7Q9Y394 339 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 PPIAL4AQ9Y536 164 aa1.78□□□□□ -2.12
VPS35-207ENST00000568191 ARID1AO14497 2285 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms