RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 VPS33AQ96AX1 596 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 LRRC58Q96CX6 371 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 EGLN2Q96KS0 407 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 SGCZQ96LD1 299 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 DUSP26Q9BV47 211 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 CADM1Q9BY67 442 aaKnown RBP12.42□□□□□ -0.42
CLK3-218ENST00000566926 HES7Q9BYE0 225 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 CXorf21Q9HAI6 301 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 GIMAP4Q9NUV9 329 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 TAS2R7Q9NYW3 318 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 SEC14L3Q9UDX4 400 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 BTNL2Q9UIR0 455 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 CES1P1Q9UKY3 287 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 CFL2Q9Y281 166 aa12.42□□□□□ -0.42
CLK3-218ENST00000566926 A0A096LPI6 279 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 CIB2O75838 187 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 LRATO95237 230 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 ATP1B1P05026 303 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 TDGF1P3P51864 188 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 SLC37A1P57057 533 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 PSME3P61289 254 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.41□□□□□ -0.42
CLK3-218ENST00000566926 PGS1Q32NB8 556 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 SAMD4BQ5PRF9 694 aaKnown RBP12.41□□□□□ -0.42
CLK3-218ENST00000566926 HLA-DQA1Q5Y7H0 255 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 C8orf82Q6P1X6 216 aaPredicted RBP12.41□□□□□ -0.42
CLK3-218ENST00000566926 IL20RBQ6UXL0 311 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 GFRALQ6UXV0 394 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 DGAT2L6Q6ZPD8 337 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 RTL4Q6ZR62 310 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.41□□□□□ -0.42
CLK3-218ENST00000566926 DHDDSQ86SQ9 333 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 RETREG3Q86VR2 466 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 GOLM1Q8NBJ4 401 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 OR7G1Q8NGA0 311 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 OR8J3Q8NGG0 315 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 UCN3Q969E3 161 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 GPATCH1Q9BRR8 931 aaKnown RBP12.41□□□□□ -0.42
CLK3-218ENST00000566926 THTPAQ9BU02 230 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 LIN28AQ9H9Z2 209 aaKnown RBP12.41□□□□□ -0.42
CLK3-218ENST00000566926 NEUROD4Q9HD90 331 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 BCAP29Q9UHQ4 241 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 UTS2RQ9UKP6 389 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 PCDHGB4Q9UN71 923 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 EXPH5Q8NEV8 1989 aa12.41□□□□□ -0.42
CLK3-218ENST00000566926 PTPN13Q12923 2485 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 USP9XQ93008 2570 aaPredicted RBP12.4□□□□□ -0.42
CLK3-218ENST00000566926 ICE1Q9Y2F5 2266 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 C2orf92A0A1B0GVN3 265 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 RFXANKO14593 260 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 AKAP10O43572 662 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 OR6B1O95007 311 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 IL3P08700 152 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 PPIBP23284 216 aaKnown RBP12.4□□□□□ -0.42
CLK3-218ENST00000566926 FEN1P39748 380 aaKnown RBP12.4□□□□□ -0.42
CLK3-218ENST00000566926 SOX3P41225 446 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 DGKQP52824 942 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 PER3P56645 1201 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 KCNJ2P63252 427 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 PMP22Q01453 160 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 FUT7Q11130 342 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 MAP4K2Q12851 820 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 GLIPR1L2Q4G1C9 344 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 C6orf10Q5SRN2 563 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 LRIF1Q5T3J3 769 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 C16orf47Q6ZP98 133 aaPredicted RBP12.4□□□□□ -0.42
CLK3-218ENST00000566926 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 C9orf40Q8IXQ3 194 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 C10orf67Q8IYJ2 551 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 ULK2Q8IYT8 1036 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 TAGAPQ8N103 731 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 LRRC25Q8N386 305 aaPredicted RBP12.4□□□□□ -0.42
CLK3-218ENST00000566926 VWA5B2Q8N398 1253 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 FBXW8Q8N3Y1 598 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 TRIML2Q8N7C3 387 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 PSD4Q8NDX1 1056 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 FBXO27Q8NI29 283 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 SSC4DQ8WTU2 575 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 GTF2H4Q92759 462 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 GFM2Q969S9 779 aaKnown RBP12.4□□□□□ -0.42
CLK3-218ENST00000566926 TP53INP1Q96A56 240 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 FRMD6Q96NE9 622 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 CCDC115Q96NT0 180 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 GAL3ST4Q96RP7 486 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 WWTR1Q9GZV5 400 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 SH3BP4Q9P0V3 963 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 ABCD2Q9UBJ2 740 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 CORO2BQ9UQ03 480 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 ENTPD4Q9Y227 616 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 SLC5A6Q9Y289 635 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 L3MBTL1Q9Y468 752 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 GMEB1Q9Y692 573 aa12.4□□□□□ -0.42
CLK3-218ENST00000566926 FREM3P0C091 2139 aa12.4□□□□□ -0.43
CLK3-218ENST00000566926 FLNBO75369 2602 aaKnown RBP12.4□□□□□ -0.43
CLK3-218ENST00000566926 ZNF407Q9C0G0 2248 aa12.39□□□□□ -0.43
CLK3-218ENST00000566926 A0A1B0GUH1 482 aa12.39□□□□□ -0.43
CLK3-218ENST00000566926 C9JVG2 144 aa12.39□□□□□ -0.43
CLK3-218ENST00000566926 FXYD1O00168 92 aa12.39□□□□□ -0.43
CLK3-218ENST00000566926 HRKO00198 91 aa12.39□□□□□ -0.43
CLK3-218ENST00000566926 PEX1O43933 1283 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms