RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SEMA4CQ9C0C4 833 aa11.91□□□□□ -0.5
CLK3-214ENST00000564096 PCDHAC1Q9H158 963 aa11.91□□□□□ -0.5
CLK3-214ENST00000564096 WDR70Q9NW82 654 aa11.91□□□□□ -0.5
CLK3-214ENST00000564096 RPS6KA6Q9UK32 745 aa11.91□□□□□ -0.5
CLK3-214ENST00000564096 SAMD4AQ9UPU9 718 aaKnown RBP11.91□□□□□ -0.5
CLK3-214ENST00000564096 CEP250Q9BV73 2442 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 TRBV11-1A0A0K0K1C0 115 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 TRABD2BA6NFA1 517 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 AQP12BA6NM10 295 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 A8MVJ9 347 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SOCS6O14544 535 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 ACOX3O15254 700 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SORBS2O94875 1100 aaKnown RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 NKX2-2O95096 273 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 HPP00738 406 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 CLPSP04118 112 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 ICAM2P13598 275 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 HOXB6P17509 224 aaKnown RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 ATP6V1B2P21281 511 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 ATP6V1C1P21283 382 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SOX18P35713 384 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SOX11P35716 441 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 KRT20P35900 424 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 MAN2A2P49641 1150 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 NRG3P56975 720 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 ELOAQ14241 798 aaKnown RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 KPNB1Q14974 876 aaKnown RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 ADRM1Q16186 407 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 DUSP5Q16690 384 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 BTBD16Q32M84 506 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 EXOSC6Q5RKV6 272 aaKnown RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 DCST2Q5T1A1 773 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 PLAG1Q6DJT9 500 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 PPP1R32Q7Z5V6 425 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SPATA24Q86W54 205 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 AQP12AQ8IXF9 295 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 C9orf40Q8IXQ3 194 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 GOLM1Q8NBJ4 401 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 OR11G2Q8NGC1 345 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 OR52E4Q8NGH9 312 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 NUBPLQ8TB37 319 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SLC38A5Q8WUX1 472 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 RASSF5Q8WWW0 418 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 OTUB1Q96FW1 271 aaPredicted RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 ZNF607Q96SK3 696 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 G6PC3Q9BUM1 346 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 SPATA5L1Q9BVQ7 753 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 NUDT9Q9BW91 350 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 WWTR1Q9GZV5 400 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 GORASP2Q9H8Y8 452 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 POLE3Q9NRF9 147 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 RYDENQ9NUL5 291 aaKnown RBP11.9□□□□□ -0.5
CLK3-214ENST00000564096 ADPRHL2Q9NX46 363 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 ANGPTL2Q9UKU9 493 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 KIF26BQ2KJY2 2108 aa11.9□□□□□ -0.5
CLK3-214ENST00000564096 PTPRZ1P23471 2315 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 ACOT8O14734 319 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 CREG1O75629 220 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 SERPINB7O75635 380 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 ZFAND5O76080 213 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 C1QCP02747 245 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 TFPTP0C1Z6 253 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 NCK1P16333 377 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 PSMA4P25789 261 aaKnown RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 GABRA3P34903 492 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 MSX2P35548 267 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 PPICP45877 212 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 ID4P47928 161 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 IL10RAQ13651 578 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 DECR1Q16698 335 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 ARHGAP11BQ3KRB8 267 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 CYP27C1Q4G0S4 372 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 FAM69BQ5VUD6 431 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 HEPHL1Q6MZM0 1159 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 KIRREL2Q6UWL6 708 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 CYP2R1Q6VVX0 501 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 LRRC74BQ6ZQY2 392 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 WDR53Q7Z5U6 358 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 TAGAPQ8N103 731 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 APCDD1LQ8NCL9 501 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 SIMC1Q8NDZ2 872 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 CHDHQ8NE62 594 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 NFAM1Q8NET5 270 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 M1APQ8TC57 530 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 SLC26A7Q8TE54 656 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 LZICQ8WZA0 190 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 HSPBAP1Q96EW2 488 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 RMND5BQ96G75 393 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 LCORQ96JN0 433 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 TREX2Q9BQ50 279 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 SCNM1Q9BWG6 230 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 DENND2DQ9H6A0 471 aaPredicted RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 ZNF160Q9HCG1 818 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 BCL2L10Q9HD36 194 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 MMP25Q9NPA2 562 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 GMPR2Q9P2T1 348 aaKnown RBP11.89□□□□□ -0.51
CLK3-214ENST00000564096 FBXL4Q9UKA2 621 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 CBLCQ9ULV8 474 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 USP22Q9UPT9 525 aa11.89□□□□□ -0.51
CLK3-214ENST00000564096 MSRB2Q9Y3D2 182 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms