RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 DCKP27707 260 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 GTF2E2P29084 291 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 MARCKSP29966 332 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 CCR7P32248 378 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 AHRP35869 848 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 P2RY2P41231 377 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 RPL35P42766 123 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 KCNJ1P48048 391 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CDH8P55286 799 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 UCP2P55851 309 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 RPL26P61254 145 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 CCZ1BP86790 482 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CCZ1P86791 482 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 GALK2Q01415 458 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 BDH1Q02338 343 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CAMK1Q14012 370 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ZNF273Q14593 569 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 NCAPD2Q15021 1401 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CHI3L2Q15782 390 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 PRICKLE4Q2TBC4 344 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 AMZ1Q400G9 498 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 IFI44LQ53G44 452 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 PPM1LQ5SGD2 360 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 AGAP7PQ5VUJ5 663 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 MEDAGQ5VYS4 303 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 PRR5LQ6MZQ0 368 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CD300LGQ6UXG3 332 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 GDPD4Q6W3E5 623 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CENPUQ71F23 418 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CYB5R4Q7L1T6 521 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 PRSS42Q7Z5A4 293 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 WDR5BQ86VZ2 330 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ERI1Q8IV48 349 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 SERPINA12Q8IW75 414 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 RBFAQ8N0V3 343 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CENPSQ8N2Z9 138 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 STX19Q8N4C7 294 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FADS6Q8N9I5 356 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 COLGALT1Q8NBJ5 622 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OR5B17Q8NGF7 314 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OR4A15Q8NGL6 344 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OR5H6Q8NGV6 325 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 SCAMP5Q8TAC9 235 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 PIK3R3Q92569 461 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 C3orf49Q96BT1 292 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 SAT2Q96F10 170 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 RRNAD1Q96FB5 475 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 KAZALD1Q96I82 304 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FAM210BQ96KR6 192 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ZNF641Q96N77 438 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 FOPNLQ96NB1 174 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FIZ1Q96SL8 496 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 SERPINI1Q99574 410 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ASCL2Q99929 193 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OMDQ99983 421 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FAM110AQ9BQ89 295 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 TMED9Q9BVK6 235 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 TSSK1BQ9BXA7 367 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 MAGEB5Q9BZ81 275 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 P2RY12Q9H244 342 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 DPEP2Q9H4A9 486 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 KAT8Q9H7Z6 458 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 GEMIN7Q9H840 131 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 KRCC1Q9NPI7 259 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 MKKSQ9NPJ1 570 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 NECTIN3Q9NQS3 549 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FGFR1OP2Q9NVK5 253 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OSER1Q9NX31 292 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 TAS2R9Q9NYW1 312 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 MTCH1Q9NZJ7 389 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 NCKIPSDQ9NZQ3 722 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ADAM22Q9P0K1 906 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OPN4Q9UHM6 478 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FZD4Q9ULV1 537 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CLEC4EQ9ULY5 219 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 UBE2J1Q9Y385 318 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 KIF13AQ9H1H9 1805 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 TTC3P53804 2025 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 A0A087WZ62 844 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 A0A1B0GW15 77 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 TCRBV21S2A2A0A5A6 115 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 LNP1A1A4G5 178 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 FBLL1A6NHQ2 334 aaKnown RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 ANXA2P2A6NMY6 339 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NEDD8-MDP1E9PL57 170 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 KLRC4-KLRK1H3BQV0 150 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 WWP2O00308 870 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PHYHO14832 338 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BCKDKO14874 412 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BCAT2O15382 392 aaPredicted RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 FLRT2O43155 660 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 KDM4BO94953 1096 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 WDR47O94967 919 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 VAMP5O95183 116 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 NADKO95544 446 aaPredicted RBP4.75□□□□□ -1.65
VPS35-205ENST00000563984 NDST3O95803 873 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 BMP15O95972 392 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 GSRP00390 522 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 PPBPP02775 128 aa4.75□□□□□ -1.65
VPS35-205ENST00000563984 HEXAP06865 529 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms