RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NXF5Q9H1B4 397 aaKnown RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 TRIM45Q9H8W5 580 aaPredicted RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 SERHLQ9NQF3 203 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 DUSP22Q9NRW4 184 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 EXD2Q9NVH0 621 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 GIN1Q9NXP7 522 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 CBLCQ9ULV8 474 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 DTX4Q9Y2E6 619 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 LOC400499M0QZD8 3231 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 MGAQ8IWI9 3026 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 CPAMD8Q8IZJ3 1885 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 TMEM247A6NEH6 219 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 TMEM200CA6NKL6 621 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ASNA1O43681 348 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 MAN1A2O60476 641 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PPM1BO75688 479 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 OR6B1O95007 311 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 NKX2-2O95096 273 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PDGFAP04085 211 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 CT45A8P0DMV1 189 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 CT45A9P0DMV2 189 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ABCD3P28288 659 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 CORO7P57737 925 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PSG6Q00889 435 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 NFYCQ13952 458 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 CYLC2Q14093 348 aaPredicted RBP9.3□□□□□ -0.92
USP3-216ENST00000559873 EFR3AQ14156 821 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 LY6DQ14210 128 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ZNF169Q14929 603 aaPredicted RBP9.3□□□□□ -0.92
USP3-216ENST00000559873 CT45A2Q5DJT8 189 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 TBCELQ5QJ74 424 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 LRIF1Q5T3J3 769 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ATAD3BQ5T9A4 648 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 SAXO2Q658L1 398 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 SLC2A7Q6PXP3 512 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 IL20RBQ6UXL0 311 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 Q6ZS92 163 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 C6orf120Q7Z4R8 191 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 DHDDSQ86SQ9 333 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 SNX32Q86XE0 403 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 DPP10Q8N608 796 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 EXD3Q8N9H8 876 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PSD4Q8NDX1 1056 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 SIMC1Q8NDZ2 872 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 FBXO30Q8TB52 745 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 GTF2H4Q92759 462 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 TMCO6Q96DC7 493 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 CMTM5Q96DZ9 223 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 OMA1Q96E52 524 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 DTNBP1Q96EV8 351 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 GIMAP5Q96F15 307 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 LRRC37BQ96QE4 947 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PHF12Q96QT6 1004 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 SECISBP2Q96T21 854 aaKnown RBP9.3□□□□□ -0.92
USP3-216ENST00000559873 INPP5KQ9BT40 448 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 G6PC3Q9BUM1 346 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PIGUQ9H490 435 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ANKRA2Q9H9E1 313 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 LIN28AQ9H9Z2 209 aaKnown RBP9.3□□□□□ -0.92
USP3-216ENST00000559873 HHATLQ9HCP6 504 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 GPATCH2Q9NW75 528 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 THUMPD1Q9NXG2 353 aaKnown RBP9.3□□□□□ -0.92
USP3-216ENST00000559873 ANKRD10Q9NXR5 420 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 PLA2G3Q9NZ20 509 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ARMCX1Q9P291 453 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 ANAPC2Q9UJX6 822 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 B3GNT3Q9Y2A9 372 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 KLF13Q9Y2Y9 288 aaPredicted RBP9.3□□□□□ -0.92
USP3-216ENST00000559873 PCDHGB6Q9Y5F9 930 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 NPFFR2Q9Y5X5 522 aa9.3□□□□□ -0.92
USP3-216ENST00000559873 OR6C70A6NIJ9 312 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 EVPLLA8MZ36 301 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 KLRC4-KLRK1H3BQV0 150 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 REM1O75628 298 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 NADKO95544 446 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 F10P00742 488 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 NPPAP01160 153 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 P04436 131 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 GSNP06396 782 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 ACP2P11117 423 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 ATP6V1C1P21283 382 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 MATN1P21941 496 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 PRDX6P30041 224 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 LCN1P31025 176 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 GABRA3P34903 492 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 CD96P40200 585 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 CDKN2CP42773 168 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 CLK3P49761 638 aaKnown RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 POU6F2P78424 691 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 FADDQ13158 208 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 GNA13Q14344 377 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 NTRK2Q16620 822 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 DUSP5Q16690 384 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 TRMT5Q32P41 509 aaKnown RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 ZNF766Q5HY98 468 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 SLC25A25Q6KCM7 469 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 NPSR1Q6W5P4 371 aa9.29□□□□□ -0.92
USP3-216ENST00000559873 C16orf47Q6ZP98 133 aaPredicted RBP9.29□□□□□ -0.92
USP3-216ENST00000559873 NUP54Q7Z3B4 507 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms