RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 ZNF410Q86VK4 478 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 OR4F17Q8NGA8 305 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 DNAJA3Q96EY1 480 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 C16orf74Q96GX8 76 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 IMMP1LQ96LU5 166 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 TECTBQ96PL2 329 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 OR4F4Q96R69 305 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 TSPAN18Q96SJ8 248 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 SDHCQ99643 169 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-207ENST00000558919 NMUR2Q9GZQ4 415 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 FAM124BQ9H5Z6 455 aaPredicted RBP2.46□□□□□ -2.02
VPS13C-207ENST00000558919 ISG20L2Q9H9L3 353 aaKnown RBP2.46□□□□□ -2.02
VPS13C-207ENST00000558919 MIOXQ9UGB7 285 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 SLC2A6Q9UGQ3 507 aa2.46□□□□□ -2.02
VPS13C-207ENST00000558919 LRIT2A6NDA9 550 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 B4DXG7 233 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 SYNGR4O95473 234 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 IGHV3-23P01764 117 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 RPA1P27694 616 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 POU3F4P49335 361 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 CCL11P51671 97 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 CNN1P51911 297 aaKnown RBP2.45□□□□□ -2.02
VPS13C-207ENST00000558919 EFNA3P52797 238 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 RAG2P55895 527 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 NLRP11P59045 1033 aaKnown RBP2.45□□□□□ -2.02
VPS13C-207ENST00000558919 SSTP61278 116 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 IL9RQ01113 521 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 CKAP4Q07065 602 aaKnown RBP2.45□□□□□ -2.02
VPS13C-207ENST00000558919 PUDPQ08623 228 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 IL18R1Q13478 541 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 SBK1Q52WX2 424 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 PRAMEF7Q5VXH5 474 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 OTPQ5XKR4 325 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 SCARA5Q6ZMJ2 495 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 MOB1BQ7L9L4 216 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 BNIPLQ7Z465 357 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 C9orf40Q8IXQ3 194 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 CCDC170Q8IYT3 715 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 ST7LQ8TDW4 575 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 ATP6V1E2Q96A05 226 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 TMEM45BQ96B21 275 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 EEF2KMTQ96G04 330 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 ZNF799Q96GE5 643 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 ZNF285Q96NJ3 590 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 DEFB118Q96PH6 123 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 ABCG4Q9H172 646 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 MBD2Q9UBB5 411 aa2.45□□□□□ -2.02
VPS13C-207ENST00000558919 TRMT6Q9UJA5 497 aaKnown RBP2.45□□□□□ -2.02
VPS13C-207ENST00000558919 BARX2Q9UMQ3 279 aaPredicted RBP2.45□□□□□ -2.02
VPS13C-207ENST00000558919 COL4A4P53420 1690 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 LRRK1Q38SD2 2015 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 FAM231BA6NCW3 169 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 TLR4O00206 839 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 LRP3O75074 770 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 STK17BO94768 372 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 NOL4O94818 638 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 TOXO94900 526 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 HOXC4P09017 264 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 SDC1P18827 310 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 TMOD1P28289 359 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 MARCKSP29966 332 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 ACVR1BP36896 505 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 TRPC1P48995 793 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 STK19P49842 368 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 ZNF133P52736 654 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 DIO3P55073 304 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 NOP14P78316 857 aaKnown RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 ZNF699Q32M78 642 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 ZNF528Q3MIS6 628 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 CMPK2Q5EBM0 449 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 IGFL2Q6UWQ7 119 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 DLEU7Q6UYE1 221 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 YRDCQ86U90 279 aaKnown RBP2.44□□□□□ -2.02
VPS13C-207ENST00000558919 UNC45BQ8IWX7 931 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 MCOLN2Q8IZK6 566 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 RNF138Q8WVD3 245 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 ELSPBP1Q96BH3 223 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 VMP1Q96GC9 406 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 EHD1Q9H4M9 534 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 COPS7AQ9UBW8 275 aa2.44□□□□□ -2.02
VPS13C-207ENST00000558919 GRIN2DO15399 1336 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 MEGF6O75095 1541 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 FAM170AA1A519 330 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 MACROD2A1Z1Q3 448 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 CCDC69A6NI79 296 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 WWP2O00308 870 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 RAMP1O60894 148 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 SDC3O75056 442 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 GOSR1O95249 250 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 CXCL14O95715 111 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 UGT1A3P35503 534 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 SLC26A2P50443 739 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 GNB2P62879 340 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 PPP1R8Q12972 351 aaKnown RBP2.43□□□□□ -2.02
VPS13C-207ENST00000558919 NME3Q13232 169 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 ZKSCAN8Q15776 578 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-207ENST00000558919 KYAT1Q16773 422 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 DCAF4L1Q3SXM0 396 aa2.43□□□□□ -2.02
VPS13C-207ENST00000558919 ACSF3Q4G176 576 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-207ENST00000558919 CELF3Q5SZQ8 465 aaKnown RBP2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms