RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C9orf62Q8N4C0 152 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 OR11H7Q8NGC8 314 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 OR10A4Q9H209 315 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 METTL17Q9H7H0 456 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 TNFRSF10DQ9UBN6 386 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 FBXO9Q9UK97 447 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 CHST2Q9Y4C5 530 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 OTOFQ9HC10 1997 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 MID1O15344 667 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 HCN1O60741 890 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 OR5F1O95221 314 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 CFDP00746 253 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 ZDHHC11BP0C7U3 371 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 PTHLHP12272 177 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 SNRPBP14678 240 aaKnown RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 CPEP16870 476 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 HLA-FP30511 346 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 SLC1A3P43003 542 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 FKBP1BP68106 108 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 SF3A2Q15428 464 aaKnown RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 ZNF613Q6PF04 617 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 SLC36A4Q6YBV0 504 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 CFAP77Q6ZQR2 320 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 PRICKLE2Q7Z3G6 844 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 IQCF2Q8IXL9 164 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 PGBD3Q8N328 593 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 ZNF527Q8NB42 609 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 DNAJA4Q8WW22 397 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 RAD51AP1Q96B01 352 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 C16orf58Q96GQ5 468 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 SLC35G5Q96KT7 338 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 FAIM2Q9BWQ8 316 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 OR51J1Q9H342 316 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 ZNF334Q9HCZ1 680 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 BRD7Q9NPI1 651 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 CUEDC1Q9NWM3 386 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 NLGN3Q9NZ94 848 aa10.68□□□□□ -0.7
LDLR-208ENST00000558518 RABL2AQ9UBK7 228 aaPredicted RBP10.68□□□□□ -0.7
LDLR-208ENST00000558518 PGRMC2O15173 223 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 EOMESO95936 686 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 ALDOBP05062 364 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 C1GALT1C1LP0DN25 315 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 NPPBP16860 134 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 UQCRC2P22695 453 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 SSR2P43308 183 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 CLDN20P56880 219 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PCDH1Q08174 1060 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 ZNF628Q5EBL2 1059 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PLEKHS1Q5SXH7 462 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 C9orf64Q5T6V5 341 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 TEX261Q6UWH6 196 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 ALKAL2Q6UX46 152 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 CEACAM19Q7Z692 300 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 TMEM25Q86YD3 366 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 KLHL36Q8N4N3 616 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 FBXL6Q8N531 539 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 AMER3Q8N944 861 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 ORAI3Q9BRQ5 295 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 NIPAL2Q9H841 368 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 DIMT1Q9UNQ2 313 aaKnown RBP10.67□□□□□ -0.7
LDLR-208ENST00000558518 TMEM5Q9Y2B1 443 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 U3KQ87 197 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 H0YIV9 168 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 CHP2O43745 196 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PIP5K1CO60331 668 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 SRPRAP08240 638 aaKnown RBP10.67□□□□□ -0.7
LDLR-208ENST00000558518 LIMS3P0CW19 117 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 LIMS4P0CW20 117 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PER3P56645 1201 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 FGL2Q14314 439 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 GALEQ14376 348 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 SLC25A25Q6KCM7 469 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 VRK2Q86Y07 508 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 NRMQ8IXM6 262 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 SLC5A11Q8WWX8 675 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 RSPO3Q9BXY4 272 aaPredicted RBP10.67□□□□□ -0.7
LDLR-208ENST00000558518 XKR8Q9H6D3 395 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 A0A1W2PS29 197 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 DAPL1A0PJW8 107 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 K7ESM1 405 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 M0R233 179 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 RECKO95980 971 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PRKACAP17612 351 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 NOS3P29474 1203 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 HCCSP53701 268 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PRKCZQ05513 592 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 CAMK1Q14012 370 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 LINGO2Q7L985 606 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 GPR155Q7Z3F1 870 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 KRT78Q8N1N4 520 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 OR5AR1Q8NGP9 310 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 PXYLP1Q8TE99 480 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 WDFY2Q96P53 400 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.67□□□□□ -0.71e-12■□□□□ 9.5
LDLR-208ENST00000558518 CACNG2Q9Y698 323 aa10.67□□□□□ -0.7
LDLR-208ENST00000558518 TRAPPC2P0DI81 140 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 TRAPPC2BP0DI82 140 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 TRIM23P36406 574 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 EPHB3P54753 998 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 RGS8P57771 180 aaPredicted RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms