RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SUSD2Q9UGT4 822 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TMEFF2Q9UIK5 374 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PLCL2Q9UPR0 1127 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 LYVE1Q9Y5Y7 322 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 SLCO1B1Q9Y6L6 691 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 LOC110117498-PIK3R3F6TDL0 507 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 SYT5O00445 386 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 BCKDKO14874 412 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 NUDT21O43809 227 aaKnown RBP11.86□□□□□ -0.51
SHMT2-229ENST00000557348 CLIC3O95833 236 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 ST6GAL1P15907 406 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 TYRP1P17643 537 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 GPR3P46089 330 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 ARRB1P49407 418 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-229ENST00000557348 CASP9P55211 416 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 RPS26P62854 115 aaKnown RBP11.86□□□□□ -0.51
SHMT2-229ENST00000557348 SPIBQ01892 262 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 BIKQ13323 160 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 FAM53BQ14153 422 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF404Q494X3 552 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 FAM180BQ6P0A1 224 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 TMEM179BQ7Z7N9 219 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 LYSMD2Q8IV50 215 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 OR2L13Q8N349 312 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 DNAJC22Q8N4W6 341 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 LINC00471Q8N535 108 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 DEFB119Q8N690 84 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 TTC29Q8NA56 475 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-229ENST00000557348 OR9A2Q8NGT5 310 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF675Q8TD23 568 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 PIK3R3Q92569 461 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 PMM1Q92871 262 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 RAB8BQ92930 207 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 MBOAT4Q96T53 435 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 TRAF4Q9BUZ4 470 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-229ENST00000557348 CCDC32Q9BV29 185 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 SLIRPQ9GZT3 109 aaKnown RBP11.86□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF556Q9HAH1 456 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 POFUT2Q9Y2G5 429 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 NOX1Q9Y5S8 564 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 SNX11Q9Y5W9 270 aa11.86□□□□□ -0.51
SHMT2-229ENST00000557348 A0A0C4DFX4 3053 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 REV3LO60673 3130 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 B4GALT2O60909 372 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 PRKRAO75569 313 aaKnown RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 ALX3O95076 343 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 GADD45GO95257 159 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MED26O95402 600 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 GPR75O95800 540 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 AK1P00568 194 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 HTR1AP08908 422 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 M6PRP20645 277 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MAOBP27338 520 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MC3RP41968 323 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MLLT3P42568 568 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 PRKAG1P54619 331 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 SLC35A2P78381 396 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 GPLD1P80108 840 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 IFITM3Q01628 133 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 EMX1Q04741 257 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 CD47Q08722 323 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 LASP1Q14847 261 aaKnown RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MICAQ29983 383 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 PRTGQ2VWP7 1150 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 FAM214AQ32MH5 1076 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 ZIK1Q3SY52 487 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 COLEC12Q5KU26 742 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 C6orf132Q5T0Z8 1188 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 CDC73Q6P1J9 531 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF605Q86T29 641 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 SLC44A2Q8IWA5 706 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 TAGAPQ8N103 731 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 OR6C4Q8NGE1 309 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 ADAMTS15Q8TE58 950 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF285Q96NJ3 590 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 PINK1Q9BXM7 581 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 TMEM121BQ9BXQ6 578 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 SERHL2Q9H4I8 314 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 SLA2Q9H6Q3 261 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 EVA1AQ9H8M9 152 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 SIAEQ9HAT2 523 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 NEK6Q9HC98 313 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 PDE7BQ9NP56 450 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 ENAMQ9NRM1 1142 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 VNN3Q9NY84 501 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 KCND3Q9UK17 655 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 CLCA2Q9UQC9 943 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MAGED1Q9Y5V3 778 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-229ENST00000557348 PEX16Q9Y5Y5 336 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 C5orf42Q9H799 3197 aa11.85□□□□□ -0.51
SHMT2-229ENST00000557348 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 SLC9B1P1A6NJY1 282 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 PLOD3O60568 738 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 NSA2O95478 260 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 C8orf89P0DMQ9 161 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 RNH1P13489 461 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 IFNA8P32881 189 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 YAP1P46937 504 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 DAPP51397 102 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms