RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 PACS2Q86VP3 889 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 FAM109AQ8N4B1 249 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 CDRT4Q8N9R6 151 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 VPS37AQ8NEZ2 397 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 OR8J2Q8NGG1 315 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 PSMA8Q8TAA3 256 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 ACTRT2Q8TDY3 377 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 NUDT8Q8WV74 236 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 HOXB13Q92826 284 aaPredicted RBP9.81□□□□□ -0.84
LINC00239-201ENST00000556973 HGDQ93099 445 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 TMBIM1Q969X1 311 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 NTNG2Q96CW9 530 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 SLC35A4Q96G79 324 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 MAGEB18Q96M61 343 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 LMF2Q9BU23 707 aaKnown RBP9.81□□□□□ -0.84
LINC00239-201ENST00000556973 DOHHQ9BU89 302 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 TSPAN10Q9H1Z9 355 aaPredicted RBP9.81□□□□□ -0.84
LINC00239-201ENST00000556973 Q9N2J8 555 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 ZFP64Q9NPA5 681 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 TUBA8Q9NY65 449 aaPredicted RBP9.81□□□□□ -0.84
LINC00239-201ENST00000556973 MRTO4Q9UKD2 239 aaKnown RBP9.81□□□□□ -0.84
LINC00239-201ENST00000556973 CBLCQ9ULV8 474 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 SLC5A6Q9Y289 635 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 ZNF835Q9Y2P0 537 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 OR10H1Q9Y4A9 318 aa9.81□□□□□ -0.84
LINC00239-201ENST00000556973 RELNP78509 3460 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 FAM166BA8MTA8 275 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 RNASET2O00584 256 aaKnown RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ZNF195O14628 629 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ANKRD28O15084 1053 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 CFLARO15519 480 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SLC19A2O60779 497 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ICOSLGO75144 302 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SEMA7AO75326 666 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 TRIM3O75382 744 aaPredicted RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SOX30O94993 753 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 AGFG2O95081 481 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ALDOCP09972 364 aaKnown RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 IL12BP29460 328 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 GABRA3P34903 492 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 MAP3K8P41279 467 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 PRIM2P49643 509 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 CLNS1AP54105 237 aaKnown RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 PSMD4P55036 377 aaKnown RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 CASP6P55212 293 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SLC10A1Q14973 349 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 GSTA3Q16772 222 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 DPY19L1Q2PZI1 675 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 C4orf17Q53FE4 359 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ANXA8L1Q5VT79 327 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 NXNQ6DKJ4 435 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 EPGNQ6UW88 154 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 NPSR1Q6W5P4 371 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 Q6ZPB1 254 aaPredicted RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SPPL2CQ8IUH8 684 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 TMEM251Q8N6I4 163 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 OR4N2Q8NGD1 307 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 CKAP2Q8WWK9 683 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 TESCQ96BS2 214 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 MOAP1Q96BY2 351 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 TMEM41AQ96HV5 264 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 JSRP1Q96MG2 331 aaPredicted RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 RILPQ96NA2 401 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 NODALQ96S42 347 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ADOQ96SZ5 270 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 DEFB127Q9H1M4 99 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 METTL7AQ9H8H3 244 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 ZDHHC11Q9H8X9 412 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 NEUROD4Q9HD90 331 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SLCO1B3Q9NPD5 702 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 PLSCR2Q9NRY7 297 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SIRT3Q9NTG7 399 aaPredicted RBP9.8□□□□□ -0.84
LINC00239-201ENST00000556973 AIG1Q9NVV5 245 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 GIN1Q9NXP7 522 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 PCDHGB4Q9UN71 923 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SNX8Q9Y5X2 465 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 GPR45Q9Y5Y3 372 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 USH1CQ9Y6N9 552 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 SPTA1P02549 2419 aa9.8□□□□□ -0.84
LINC00239-201ENST00000556973 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 UQCRHLA0A096LP55 91 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 A0A1B0GTH9 108 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 PRSS51A0A1B0GVH4 220 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 LRRTM2O43300 516 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 ATP8B1O43520 1251 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 CDC40O60508 579 aaKnown RBP eCLIP9.79□□□□□ -0.84
LINC00239-201ENST00000556973 PDE9AO76083 593 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 NKX2-2O95096 273 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 KCNH1O95259 989 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 IL33O95760 270 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 C6orf47O95873 294 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 IGHG3P01860 377 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 HMGN2P05204 90 aaKnown RBP9.79□□□□□ -0.84
LINC00239-201ENST00000556973 IDO1P14902 403 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 EFNA1P20827 205 aaPredicted RBP9.79□□□□□ -0.84
LINC00239-201ENST00000556973 ELAVL4P26378 380 aaKnown RBP9.79□□□□□ -0.84
LINC00239-201ENST00000556973 MAGEA5P43359 124 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 KIR3DL1P43629 444 aa9.79□□□□□ -0.84
LINC00239-201ENST00000556973 CCT3P49368 545 aaKnown RBP9.79□□□□□ -0.84
LINC00239-201ENST00000556973 HBA1P69905 142 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms