RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CD8B2A6NJW9 211 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 PLOD3O60568 738 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 CD8BP10966 210 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 CA8P35219 290 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 NUDT1P36639 197 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ATP12AP54707 1039 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 BTG1P62324 171 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 GNA13Q14344 377 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 SMUG1Q53HV7 270 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 RASSF6Q6ZTQ3 369 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 PARS2Q7L3T8 475 aaKnown RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 RRM2BQ7LG56 351 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 PRICKLE2Q7Z3G6 844 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ZNF547Q8IVP9 402 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 OR5AR1Q8NGP9 310 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 SUN3Q8TAQ9 357 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 RGMAQ96B86 450 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 OTUB1Q96FW1 271 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ZNF514Q96K75 400 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 COQ10AQ96MF6 247 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 TEX12Q9BXU0 123 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 GLIPR2Q9H4G4 154 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 PELI2Q9HAT8 420 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 LHX9Q9NQ69 397 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 CNIH4Q9P003 139 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 EXTL2Q9UBQ6 330 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 K7ESM1 405 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 EFCAB14O75071 495 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 CHRM4P08173 479 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ELK1P19419 428 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 GPR1P46091 355 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 MLLT1Q03111 559 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 INSL4Q14641 139 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ZNF791Q3KP31 576 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ESCO2Q56NI9 601 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 RAET1GQ6H3X3 334 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 AMIGO1Q86WK6 493 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 OR2L2Q8NH16 312 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 LINC00615Q96LM1 132 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 PINK1Q9BXM7 581 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 TGM5O43548 720 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 IFNA8P32881 189 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ATP6V1E1P36543 226 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 ANXA11P50995 505 aaKnown RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 PRKAG1P54619 331 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 TRAM2Q15035 370 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 AADACL4Q5VUY2 407 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 OR52N1Q8NH53 320 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 SPRYD4Q8WW59 207 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 UCN3Q969E3 161 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 AMDHD1Q96NU7 426 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 C11orf49Q9H6J7 331 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 CUEDC1Q9NWM3 386 aaPredicted RBP16.49■□□□□ 0.23
SYNE3-202ENST00000553340 SLC23A1Q9UHI7 598 aa16.49■□□□□ 0.23
SYNE3-202ENST00000553340 FEZF1A0PJY2 475 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 ZSCAN5BA6NJL1 495 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 NDUFS4O43181 175 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 CH25HO95992 272 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 ACP5P13686 325 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 SLC6A1P30531 599 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 HOXD11P31277 338 aaPredicted RBP16.48■□□□□ 0.23
SYNE3-202ENST00000553340 AGFG1P52594 562 aaKnown RBP16.48■□□□□ 0.23
SYNE3-202ENST00000553340 KIAA1161Q6NSJ0 714 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 DCUN1D3Q8IWE4 304 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 FAM46AQ96IP4 442 aaKnown RBP16.48■□□□□ 0.23
SYNE3-202ENST00000553340 LINC00597Q9H2U6 94 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 SPHK2Q9NRA0 654 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 B3GNT2Q9NY97 397 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 NCKAP1Q9Y2A7 1128 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 A0A0G2JPF8 293 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 HNRNPCL2B2RXH8 293 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 HNRNPCL3B7ZW38 293 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 KPNA3O00505 521 aaPredicted RBP16.48■□□□□ 0.23
SYNE3-202ENST00000553340 HNRNPCL4P0DMR1 293 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 IFI30P13284 250 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 GALP22466 123 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 CCR8P51685 355 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 GPR176Q14439 515 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 SLC30A6Q6NXT4 461 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 GJD3Q8N144 294 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 C9orf62Q8N4C0 152 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 ZNF366Q8N895 744 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 OR4M2Q8NGB6 313 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 NR4A3Q92570 626 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 UBL7Q96S82 380 aaPredicted RBP16.48■□□□□ 0.23
SYNE3-202ENST00000553340 YIPF4Q9BSR8 244 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 ATP13A2Q9NQ11 1180 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 ADAM29Q9UKF5 820 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 SLC13A4Q9UKG4 626 aa16.48■□□□□ 0.23
SYNE3-202ENST00000553340 EXOGQ9Y2C4 368 aaKnown RBP16.48■□□□□ 0.23
SYNE3-202ENST00000553340 CXCL10P02778 98 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 HK1P19367 917 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 UQCRC1P31930 480 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 TALDO1P37837 337 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 NCBP2P52298 156 aaKnown RBP eCLIP16.47■□□□□ 0.23
SYNE3-202ENST00000553340 LRRC32Q14392 662 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 EOGTQ5NDL2 527 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 LY6G5CQ5SRR4 150 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 IDNKQ5T6J7 187 aa16.47■□□□□ 0.23
SYNE3-202ENST00000553340 ZNF782Q6ZMW2 699 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms