RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IQCHQ86VS3 1027 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 FAM26EQ8N5C1 309 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OR52H1Q8NGJ2 320 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OR5D16Q8NGK9 328 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GOT1L1Q8NHS2 421 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 LHFPL5Q8TAF8 219 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GANCQ8TET4 914 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 MARVELD3Q96A59 401 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CREB3L1Q96BA8 519 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SCMH1Q96GD3 660 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM19Q96HH6 336 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CXorf58Q96LI9 332 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CASD1Q96PB1 797 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ORAI3Q9BRQ5 295 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ARHGAP9Q9BRR9 750 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 THAP7Q9BT49 309 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 MED18Q9BUE0 208 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SARGQ9BW04 601 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OSGEPL1Q9H4B0 414 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SERHL2Q9H4I8 314 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 REEP4Q9H6H4 257 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KCNK12Q9HB15 430 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 MIEF1Q9NQG6 463 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TAAR2Q9P1P5 351 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SRRDQ9UH36 339 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 A4GNTQ9UNA3 340 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 FLVCR2Q9UPI3 526 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ZFR2Q9UPR6 939 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 A0A0G2JN53 185 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 C5orf58C9J3I9 102 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ANHXE9PGG2 379 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 NPC1O15118 1278 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TRIM3O75382 744 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CATP04040 527 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 IL3P08700 152 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ACSM4P0C7M7 580 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SPTBP11277 2137 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 DRD5P21918 477 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GIFP27352 417 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 IMPA1P29218 277 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GABRA5P31644 462 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 VIPR1P32241 457 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 INPP1P49441 399 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 DSTNP60981 165 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ST8SIA6P61647 398 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SYPL1Q16563 259 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM255AQ5JRV8 349 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SFRP5Q5T4F7 317 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KIAA1161Q6NSJ0 714 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 METTL2BQ6P1Q9 378 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ATRAIDQ6UW56 229 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 LYPD4Q6UWN0 246 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ADGRD2Q7Z7M1 963 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TRIM69Q86WT6 500 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ADGRF3Q8IZF5 1079 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 FAM9CQ8IZT9 166 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 DCAF4L2Q8NA75 395 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CHST14Q8NCH0 376 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 OR4D9Q8NGE8 314 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 HMGB4Q8WW32 186 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 THAP4Q8WY91 577 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 IGSF21Q96ID5 467 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 REG4Q9BYZ8 158 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KCNN2Q9H2S1 579 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 PIGUQ9H490 435 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SUV39H2Q9H5I1 410 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ERVMER34-1Q9H9K5 563 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SEMA3GQ9NS98 782 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 TDP1Q9NUW8 608 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ZDHHC3Q9NYG2 299 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SPG21Q9NZD8 308 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CNIH4Q9P003 139 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 STOX2Q9P2F5 926 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SLC9A8Q9Y2E8 581 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ATG2BQ96BY7 2078 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SCN10AQ9Y5Y9 1956 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF106Q9H2Y7 1883 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ANKDD1BA6NHY2 528 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 FAM183AA6NL82 134 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 H0YIV9 168 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 STK25O00506 426 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GPR171O14626 319 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GPR37L1O60883 481 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 STATHP02808 62 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 H1F0P07305 194 aaKnown RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 C8AP07357 584 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 PTX3P26022 381 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SHC1P29353 583 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 FGF9P31371 208 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-214ENST00000552783 THBS2P35442 1172 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 CTSCP53634 463 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 PRKAG1P54619 331 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 DCDC1P59894 354 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 KRT33BQ14525 404 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 GPR68Q15743 365 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 NTRK2Q16620 822 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 SLC25A35Q3KQZ1 300 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 C3orf38Q5JPI3 329 aa4.57□□□□□ -1.68
LIMA1-214ENST00000552783 ANXA8L1Q5VT79 327 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms