RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 MTIF2P46199 727 aaKnown RBP4.02□□□□□ -1.77
LIMA1-205ENST00000550592 ERVK11-1P61568 191 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 RPS27AP62979 156 aaKnown RBP4.02□□□□□ -1.77
LIMA1-205ENST00000550592 ELAVL2Q12926 359 aaKnown RBP4.02□□□□□ -1.77
LIMA1-205ENST00000550592 OR6B2Q6IFH4 312 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 CDC42EP5Q6NZY7 148 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 Q6ZRG5 221 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 SLC22A16Q86VW1 577 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 KCNMB4Q86W47 210 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 CNNM3Q8NE01 707 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 SSC4DQ8WTU2 575 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 PNPLA2Q96AD5 504 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 NABP1Q96AH0 204 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 SLC45A3Q96JT2 553 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 AGAP3Q96P47 875 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 TAAR6Q96RI8 345 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 TNFRSF13CQ96RJ3 184 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 TRIM51Q9BSJ1 452 aa4.02□□□□□ -1.77
LIMA1-205ENST00000550592 ANKRD11Q6UB99 2663 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-205ENST00000550592 TRANK1O15050 2925 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ZSWIM8A7E2V4 1837 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 IGLV4-3A0A075B6K6 122 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 LOC390937A0A1W2PQ73 354 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ASB14A6NK59 587 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 MEI4A8MW99 385 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 NEDD8-MDP1E9PL57 170 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 K7EQG2 157 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 NTN3O00634 580 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ANXA9O76027 345 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 OR6B1O95007 311 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 MT-ATP6P00846 226 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 IGHG1P01857 330 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 FCER2P06734 321 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ADORA3P0DMS8 318 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 KRT5P13647 590 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 CD1DP15813 335 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 CCNA2P20248 432 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 PPP2R1AP30153 589 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 TKTL1P51854 596 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 SRPXP78539 464 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 FASTKQ14296 549 aaKnown RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 FCN2Q15485 313 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 CMPK2Q5EBM0 449 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 DCAF12Q5T6F0 453 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 LIPJQ5W064 366 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 RHBDD2Q6NTF9 364 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 MCM10Q7L590 875 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 PPP1R42Q7Z4L9 355 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ADGRD2Q7Z7M1 963 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 YRDCQ86U90 279 aaKnown RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 FAM131BQ86XD5 332 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 KRTAP7-1Q8IUC3 87 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 KDM8Q8N371 416 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 BADQ92934 168 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 MRPL38Q96DV4 380 aaKnown RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ZNF599Q96NL3 588 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 FAM111AQ96PZ2 611 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 CBWD1Q9BRT8 395 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ATG10Q9H0Y0 220 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 SIRPDQ9H106 197 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 HPS4Q9NQG7 708 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 DEPPQ9NTK1 212 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 HOOK1Q9UJC3 728 aaKnown RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 PLEKHA6Q9Y2H5 1048 aa4.01□□□□□ -1.77
LIMA1-205ENST00000550592 FLNBO75369 2602 aaKnown RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 DDX60LQ5H9U9 1706 aaKnown RBP4.01□□□□□ -1.77
LIMA1-205ENST00000550592 ZMYM6O95789 1325 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 COL1A1P02452 1464 aaPredicted RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 LAMB2P55268 1798 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 CHD6Q8TD26 2715 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 IGHV3OR16-10A0A075B7F0 116 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 BCLAF3A2AJT9 711 aaKnown RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 TMEM89A2RUT3 159 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 IGLON5A6NGN9 336 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 TMCO5BA8MYB1 307 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 ZNF749O43361 778 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 SSX5O60225 188 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 FRAT2O75474 233 aaPredicted RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 MBL2P11226 248 aaPredicted RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 ID1P41134 155 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 RABIFP47224 123 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 NUMBP49757 651 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 ZNF131P52739 623 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 NDST1P52848 882 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 NLRP11P59045 1033 aaKnown RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 KLF5Q13887 457 aaPredicted RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 CARTPTQ16568 116 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 ECSCRQ19T08 205 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 DDI2Q5TDH0 399 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 GSG1LQ6UXU4 331 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 ZNF497Q6ZNH5 498 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 BNIPLQ7Z465 357 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 GPR142Q7Z601 462 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 PHC2Q8IXK0 858 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 LINC00518Q8N0U6 118 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 COLGALT1Q8NBJ5 622 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 CHDHQ8NE62 594 aaPredicted RBP4□□□□□ -1.77
LIMA1-205ENST00000550592 OR1B1Q8NGR6 318 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 RDH11Q8TC12 318 aa4□□□□□ -1.77
LIMA1-205ENST00000550592 NPRL2Q8WTW4 380 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms