RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 GHRLQ9UBU3 117 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 ATP6V1HQ9UI12 483 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 BLOC1S6Q9UL45 172 aa3.3□□□□□ -1.88
VPS29-205ENST00000548539 TRABD2BA6NFA1 517 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 MFSD2BA6NFX1 497 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 FOXI3A8MTJ6 420 aaPredicted RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 ALOX15BO15296 676 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CLDN3O15551 220 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 PEX11AO75192 247 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 NUDT14O95848 222 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 MT-ND1P03886 318 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 SLC35G4P0C7Q5 338 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 TSPY4P0CV99 314 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 TSPY10P0CW01 314 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CALCBP10092 127 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CAPN2P17655 700 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CYLC1P35663 651 aaPredicted RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 PPIAP62937 165 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 TRA2BP62995 288 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 ZNF33BQ06732 778 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 ZP4Q12836 540 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 OVGP1Q12889 678 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CRMP1Q14194 572 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 EIF2B1Q14232 305 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 ABRAXAS2Q15018 415 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CNPY1Q3B7I2 92 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 PRR5LQ6MZQ0 368 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 SLC25A42Q86VD7 318 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 ZNF573Q86YE8 665 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 EFCAB13Q8IY85 973 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CCDC36Q8IYA8 594 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 GCNT2Q8N0V5 402 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 NTNG2Q96CW9 530 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 RBM18Q96H35 190 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 RBM4BQ9BQ04 359 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 C19orf43Q9BQ61 176 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 FICDQ9BVA6 458 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 RBM24Q9BX46 236 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 GNB4Q9HAV0 340 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 ABCC13Q9NSE7 274 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 CENPMQ9NSP4 180 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 DUS2Q9NX74 493 aaKnown RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 PAK5Q9P286 719 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 MBD2Q9UBB5 411 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 MFHAS1Q9Y4C4 1052 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 PRSS21Q9Y6M0 314 aa3.29□□□□□ -1.88
VPS29-205ENST00000548539 TP53BP1Q12888 1972 aaPredicted RBP3.29□□□□□ -1.88
VPS29-205ENST00000548539 PARD3Q8TEW0 1356 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 NPIPA5A0A0B4J1W7 369 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 A0A1B0GUL7 405 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 ACOD1A6NK06 481 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 NPIPA5E9PKD4 350 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 H3BTX0 84 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 SDHDO14521 159 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 CASKO14936 926 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 GALR3O60755 368 aaPredicted RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 NOL3O60936 208 aaKnown RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 OR4F21O95013 312 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 IGHV3-13P01766 116 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 WNT2P09544 360 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 KRT13P13646 458 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 ACAA2P42765 397 aaKnown RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 BRCC3P46736 316 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 ARHGDIAP52565 204 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 TFDP1Q14186 410 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 NHLRC3Q5JS37 347 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 ZNF506Q5JVG8 444 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 SLX4IPQ5VYV7 408 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 METTL7BQ6UX53 244 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 HACD2Q6Y1H2 254 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 FAM43BQ6ZT52 329 aaPredicted RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 ARMCX2Q7L311 632 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 NET1Q7Z628 596 aaPredicted RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 LHFPL4Q7Z7J7 247 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 LRRC49Q8IUZ0 686 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 NFAM1Q8NET5 270 aaPredicted RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 CRYGNQ8WXF5 182 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 ART4Q93070 314 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 TADA1Q96BN2 335 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 HPDLQ96IR7 371 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 VSTM2LQ96N03 204 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 VPS35Q96QK1 796 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 TTYH2Q9BSA4 534 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 GSDMCQ9BYG8 508 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 RDH8Q9NYR8 311 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 TMOD2Q9NZR1 351 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 KLRF1Q9NZS2 232 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 ARMCX1Q9P291 453 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 EPS15L1Q9UBC2 864 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 MLXQ9UH92 298 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 CHMP2BQ9UQN3 213 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 RNF24Q9Y225 148 aa3.28□□□□□ -1.88
VPS29-205ENST00000548539 MRPL11Q9Y3B7 192 aaKnown RBP3.28□□□□□ -1.88
VPS29-205ENST00000548539 ZSCAN5CA6NGD5 496 aaPredicted RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 LRRC30A6NM36 301 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 WASH3PC4AMC7 463 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 C11orf98E9PRG8 122 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 PHF1O43189 567 aaPredicted RBP3.27□□□□□ -1.89
VPS29-205ENST00000548539 TOXO94900 526 aa3.27□□□□□ -1.89
VPS29-205ENST00000548539 VENTXO95231 258 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms