RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZNF610Q8N9Z0 462 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 GFM2Q969S9 779 aaKnown RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 ATOH8Q96SQ7 321 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 STMN4Q9H169 189 aaPredicted RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 FBXL2Q9UKC9 423 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 SNX12Q9UMY4 172 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 DTX4Q9Y2E6 619 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 ZNF780BQ9Y6R6 833 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 RNF223E7ERA6 249 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 HS3ST1O14792 307 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 ERAL1O75616 437 aaKnown RBP15.26■□□□□ 0.03
VPS29-204ENST00000548259 CLDN9O95484 217 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 KLK1P06870 262 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 GRK2P25098 689 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 RPS4XP62701 263 aaKnown RBP15.26■□□□□ 0.03
VPS29-204ENST00000548259 EXOSC7Q15024 291 aaKnown RBP15.26■□□□□ 0.03
VPS29-204ENST00000548259 EXOC3L2Q2M3D2 409 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 GRTP1Q5TC63 336 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 RAET1LQ5VY80 246 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 ANKRD34AQ69YU3 496 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 TTC19Q6DKK2 380 aaPredicted RBP15.26■□□□□ 0.03
VPS29-204ENST00000548259 DESI1Q6ICB0 168 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 SLC48A1Q6P1K1 146 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 METTL2BQ6P1Q9 378 aaKnown RBP15.26■□□□□ 0.03
VPS29-204ENST00000548259 CCDC91Q7Z6B0 441 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 LRRC8AQ8IWT6 810 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 CTAGE3PQ8IX95 158 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 PHC2Q8IXK0 858 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 TMBIM1Q969X1 311 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 ATP6V1E2Q96A05 226 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 PIGQQ9BRB3 760 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 PINK1Q9BXM7 581 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 IPPKQ9H8X2 491 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 RNF122Q9H9V4 155 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 MAT2BQ9NZL9 334 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 STOML1Q9UBI4 398 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 PLLPQ9Y342 182 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 EMC9Q9Y3B6 208 aa15.26■□□□□ 0.03
VPS29-204ENST00000548259 SONP18583 2426 aaKnown RBP15.26■□□□□ 0.03
VPS29-204ENST00000548259 ZIC3O60481 467 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 PIAS1O75925 651 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 CGAP01215 116 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 NID1P14543 1247 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 TCEA1P23193 301 aaKnown RBP15.25■□□□□ 0.03
VPS29-204ENST00000548259 LOXP28300 417 aaPredicted RBP15.25■□□□□ 0.03
VPS29-204ENST00000548259 FEN1P39748 380 aaKnown RBP15.25■□□□□ 0.03
VPS29-204ENST00000548259 ALDH18A1P54886 795 aaKnown RBP15.25■□□□□ 0.03
VPS29-204ENST00000548259 OCRLQ01968 901 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 PFKFB4Q16877 469 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 FAM83EQ2M2I3 478 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 OR5M10Q6IEU7 315 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 FAM111BQ6SJ93 734 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 CYS1Q717R9 158 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 HIPK1Q86Z02 1210 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 KLHL7Q8IXQ5 586 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 L3MBTL4Q8NA19 623 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 OR52R1Q8NGF1 315 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 RHEBL1Q8TAI7 183 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 WDR20Q8TBZ3 569 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 TRPC4APQ8TEL6 797 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 IGFBPL1Q8WX77 278 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 FIG4Q92562 907 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 SLC35A4Q96G79 324 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 ADOQ96SZ5 270 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 FAIM2Q9BWQ8 316 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 REG4Q9BYZ8 158 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 TRIM31Q9BZY9 425 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 PTGES2Q9H7Z7 377 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 SMYD2Q9NRG4 433 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 SDHAF3Q9NRP4 125 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 PPP4R1LQ9P1A2 415 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 HEY2Q9UBP5 337 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 PCDHA9Q9Y5H5 950 aa15.25■□□□□ 0.03
VPS29-204ENST00000548259 DSCAMO60469 2012 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 PLGP00747 810 aaPredicted RBP15.24■□□□□ 0.03
VPS29-204ENST00000548259 TCP1P17987 556 aaKnown RBP15.24■□□□□ 0.03
VPS29-204ENST00000548259 GPX6P59796 221 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 IFT88Q13099 833 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 GTF2H2Q13888 395 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 GANABQ14697 944 aaKnown RBP15.24■□□□□ 0.03
VPS29-204ENST00000548259 SGCBQ16585 318 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 ERCC6LQ2NKX8 1250 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 CHRFAM7AQ494W8 412 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 FRG2Q64ET8 278 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 GTF2H2CQ6P1K8 395 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 KLC3Q6P597 504 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 LARP4Q71RC2 724 aaKnown RBP eCLIP15.24■□□□□ 0.03
VPS29-204ENST00000548259 FAM214BQ7L5A3 538 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 STK32CQ86UX6 486 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 GTPBP3Q969Y2 492 aaKnown RBP15.24■□□□□ 0.03
VPS29-204ENST00000548259 KLHL29Q96CT2 875 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 ERP27Q96DN0 273 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 FRG2BQ96QU4 278 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 PRRG4Q9BZD6 226 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 PFDN4Q9NQP4 134 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 YAE1D1Q9NRH1 226 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 ZNF639Q9UID6 485 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 LAMP3Q9UQV4 416 aa15.24■□□□□ 0.03
VPS29-204ENST00000548259 GPR55Q9Y2T6 319 aaPredicted RBP15.24■□□□□ 0.03
VPS29-204ENST00000548259 ACOT9Q9Y305 439 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms