RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 HEPACAMQ14CZ8 416 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 FBXL19-AS1Q494R0 122 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 SPDYAQ5MJ70 313 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 OR5M10Q6IEU7 315 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 PLXDC2Q6UX71 529 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 ZYG11AQ6WRX3 759 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 C9orf106Q8NAJ2 232 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.14□□□□□ -0.47
CPSF6-204ENST00000547486 RNASE6Q93091 150 aaKnown RBP12.14□□□□□ -0.47
CPSF6-204ENST00000547486 TMCO6Q96DC7 493 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 ERP27Q96DN0 273 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 SLC35A4Q96G79 324 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 TUBA1CQ9BQE3 449 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 OR2B2Q9GZK3 357 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 CALHM2Q9HA72 323 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 FOLH1BQ9HBA9 442 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 FBXL2Q9UKC9 423 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 STK38LQ9Y2H1 464 aa12.14□□□□□ -0.47
CPSF6-204ENST00000547486 FREM3P0C091 2139 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 MBD3L4A6NDZ8 208 aaPredicted RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 MBD3L3A6NE82 208 aaPredicted RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 MBD3L5A6NJ08 208 aaPredicted RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 MYO1GB0I1T2 1018 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 PLOD3O60568 738 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 ERN1O75460 977 aaKnown RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 PROCP04070 461 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 DDCP20711 480 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 ASCL1P50553 236 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 GAS1P54826 345 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 GFRA1P56159 465 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 C2orf80Q0P641 193 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 FOXF2Q12947 444 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 FAM71E1Q6IPT2 247 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 LARP4Q71RC2 724 aaKnown RBP eCLIP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 TRIM46Q7Z4K8 759 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 PLCZ1Q86YW0 608 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 SLC44A2Q8IWA5 706 aaPredicted RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 TRIM42Q8IWZ5 723 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 OR14L1PQ8NHC6 308 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 MBD3L2Q8NHZ7 208 aaPredicted RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 ZPLD1Q8TCW7 415 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 RNF138Q8WVD3 245 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 G6PC3Q9BUM1 346 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 DNAJB12Q9NXW2 375 aaKnown RBP12.13□□□□□ -0.47
CPSF6-204ENST00000547486 JKAMPQ9P055 326 aa12.13□□□□□ -0.47
CPSF6-204ENST00000547486 SPG11Q96JI7 2443 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 KIAA1549Q9HCM3 1950 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 CCDC151A5D8V7 595 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 ZIC3O60481 467 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 JUNP05412 331 aaKnown RBP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 MYL2P10916 166 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 CTSSP25774 331 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 MPIP34949 423 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 ART1P52961 327 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 IST1P53990 364 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 PSG6Q00889 435 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 SRYQ05066 204 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 SF3B4Q15427 424 aaKnown RBP eCLIP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 ADGRE4PQ86SQ3 457 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 SAMD14Q8IZD0 417 aaPredicted RBP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 FAM9CQ8IZT9 166 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 CDC26Q8NHZ8 85 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 EFHD2Q96C19 240 aaPredicted RBP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 BBS4Q96RK4 519 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 GPATCH1Q9BRR8 931 aaKnown RBP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 POLDIP3Q9BY77 421 aaKnown RBP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 SHCBP1LQ9BZQ2 653 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 RASSF1Q9NS23 344 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 TAS2R10Q9NYW0 307 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 TAS2R7Q9NYW3 318 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 FLRT3Q9NZU0 649 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 CBLCQ9ULV8 474 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 CCL27Q9Y4X3 112 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 POLR3HQ9Y535 204 aaPredicted RBP12.12□□□□□ -0.47
CPSF6-204ENST00000547486 WIF1Q9Y5W5 379 aa12.12□□□□□ -0.47
CPSF6-204ENST00000547486 UPK1AO00322 258 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 PLIN3O60664 434 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 ABCB7O75027 752 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 GLRA3O75311 464 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 CYP4B1P13584 511 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 TCEA1P23193 301 aaKnown RBP12.11□□□□□ -0.47
CPSF6-204ENST00000547486 GRK2P25098 689 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 SRD5A2P31213 254 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 MC3RP41968 323 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 LHX2P50458 406 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 NCBP2P52298 156 aaKnown RBP eCLIP12.11□□□□□ -0.47
CPSF6-204ENST00000547486 PNLIPRP2P54317 469 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 DNAJB13P59910 316 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 ZNF763Q0D2J5 394 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 KIAA0040Q15053 153 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 ERCC6LQ2NKX8 1250 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 TMEM107Q6UX40 140 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 FRMD7Q6ZUT3 714 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 LINC01560Q8TB33 94 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 CCDC126Q96EE4 140 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 EGLN2Q96KS0 407 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 RTN4RQ9BZR6 473 aa12.11□□□□□ -0.47
CPSF6-204ENST00000547486 CLEC4MQ9H2X3 399 aaPredicted RBP12.11□□□□□ -0.47
CPSF6-204ENST00000547486 GLIPR2Q9H4G4 154 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 226.5 ms