RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OR4K13Q8NH42 304 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 CDS1Q92903 461 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 TGM7Q96PF1 710 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 SLC7A7Q9UM01 511 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 UTRNP46939 3433 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 TET1Q8NFU7 2136 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 ANXA2P2A6NMY6 339 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 ANXA2P07355 339 aaKnown RBP14.79□□□□□ -0.04
CUX1-211ENST00000546411 AHRP35869 848 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 HDDC2Q7Z4H3 204 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 TMEM150AQ86TG1 271 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 MSRB3Q8IXL7 192 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 ACBD7Q8N6N7 88 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 THEM6Q8WUY1 208 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 HHIPL1Q96JK4 782 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 SPNS1Q9H2V7 528 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 SNX11Q9Y5W9 270 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 MAU2Q9Y6X3 613 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 C11orf98E9PRG8 122 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 FOXE1O00358 373 aaPredicted RBP14.79□□□□□ -0.04
CUX1-211ENST00000546411 CXCL10P02778 98 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 GIPRP48546 466 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 ZNF91Q05481 1191 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 C11orf91Q3C1V1 193 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 TBRG1Q3YBR2 411 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 COPS7AQ9UBW8 275 aa14.79□□□□□ -0.04
CUX1-211ENST00000546411 DLGAP1O14490 977 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 OXSR1O95747 527 aaPredicted RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 ADORA3P0DMS8 318 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 JUNDP17535 347 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 RPS15AP62244 130 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 RIMKLAQ8IXN7 391 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 Q8N402 240 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 OR10H5Q8NGA6 315 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 MOSPD2Q8NHP6 518 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 SLC41A3Q96GZ6 507 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 ADAD1Q96M93 576 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 GPN2Q9H9Y4 310 aaPredicted RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 SRA1Q9HD15 236 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 CENPMQ9NSP4 180 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 ATG4BQ9Y4P1 393 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 C12orf71A8MTZ7 269 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 SLC16A6O15403 523 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 SEC14L2O76054 403 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 AIFM1O95831 613 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 BMP4P12644 408 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 GNALP38405 381 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 SLC19A1P41440 591 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 CXCR4P61073 352 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 BNC1Q01954 994 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 EIF4EBP2Q13542 120 aaPredicted RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 ZNF77Q15935 545 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 EOGTQ5NDL2 527 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 KDM4DQ6B0I6 523 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 CEACAM19Q7Z692 300 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 NARS2Q96I59 477 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 METTL2AQ96IZ6 378 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 ACTRT3Q9BYD9 372 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 SAP130Q9H0E3 1048 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 TMEM168Q9H0V1 697 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 CLEC3AO75596 197 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 CD22P20273 847 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 CXCR1P25024 350 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 PSMD4P55036 377 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 CDH24Q86UP0 819 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 LNX2Q8N448 690 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 OR4F15Q8NGB8 312 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 DUS3LQ96G46 650 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 CNDP2Q96KP4 475 aaKnown RBP14.78□□□□□ -0.04
CUX1-211ENST00000546411 HSPA12BQ96MM6 686 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 FRMD6Q96NE9 622 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 FAM83CQ9BQN1 747 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 TRIM2Q9C040 744 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 PRTFDC1Q9NRG1 225 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 STUB1Q9UNE7 303 aa14.78□□□□□ -0.04
CUX1-211ENST00000546411 GVINP1Q7Z2Y8 2422 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 A0A0G2JPF8 293 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 UBE2QL1A1L167 161 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 SH3D21A4FU49 640 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 FAM25EA8MYX2 175 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 HNRNPCL3B7ZW38 293 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 SGK494L7N484 410 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 RDH16O75452 317 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 MT-ND5P03915 603 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 HNRNPCL4P0DMR1 293 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 HHEXQ03014 270 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 METTL21AQ8WXB1 218 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 SMPDL3BQ92485 455 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 TM4SF18Q96CE8 201 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 HRASLS5Q96KN8 279 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 NRTNQ99748 197 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 MS4A8Q9BY19 250 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 ZDHHC5Q9C0B5 715 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 ENAMQ9NRM1 1142 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 SPATA6Q9NWH7 488 aaPredicted RBP14.77□□□□□ -0.04
CUX1-211ENST00000546411 APOBEC3BQ9UH17 382 aaKnown RBP14.77□□□□□ -0.04
CUX1-211ENST00000546411 HCN2Q9UL51 889 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 EXOSC1Q9Y3B2 195 aaKnown RBP14.77□□□□□ -0.04
CUX1-211ENST00000546411 PTPRFP10586 1907 aa14.77□□□□□ -0.04
CUX1-211ENST00000546411 SCDO00767 359 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms