RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 EHD3Q9NZN3 535 aa7.71□□□□□ -1.18
USP28-215ENST00000545608 HEY2Q9UBP5 337 aa7.71□□□□□ -1.18
USP28-215ENST00000545608 MTRF1LQ9UGC7 380 aaKnown RBP7.71□□□□□ -1.18
USP28-215ENST00000545608 TMCO1Q9UM00 188 aa7.71□□□□□ -1.18
USP28-215ENST00000545608 CFL2Q9Y281 166 aa7.71□□□□□ -1.18
USP28-215ENST00000545608 PLLPQ9Y342 182 aa7.71□□□□□ -1.18
USP28-215ENST00000545608 TUBAL3A6NHL2 446 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 GOLGA6L10A6NI86 522 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 A8MT66 165 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 TRIM49D1C9J1S8 452 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 POC1B-GALNT4F8VUJ3 575 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 ST8SIA5O15466 376 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 CDH16O75309 829 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 ACTL6AO96019 429 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 OTCP00480 354 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 CHN1P15882 459 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 CD33P20138 364 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 DRD5P21918 477 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 CNTFP26441 200 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 HSD17B3P37058 310 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 PPICP45877 212 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 ALDH9A1P49189 494 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 STARP49675 285 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 EMDP50402 254 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 MRPS35P82673 323 aaKnown RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 CKAP4Q07065 602 aaKnown RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 PLCXD2Q0VAA5 305 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 FOXF2Q12947 444 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 SF3B4Q15427 424 aaKnown RBP eCLIP7.7□□□□□ -1.18
USP28-215ENST00000545608 UNC50Q53HI1 259 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 SLC30A6Q6NXT4 461 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 PLXDC2Q6UX71 529 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 TGIF2LYQ8IUE0 185 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 WDSUB1Q8N9V3 476 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 GOT1L1Q8NHS2 421 aaPredicted RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 RDH11Q8TC12 318 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 ZPLD1Q8TCW7 415 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 GTPBP3Q969Y2 492 aaKnown RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 KLHL29Q96CT2 875 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 LRRC46Q96FV0 321 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 RMND5BQ96G75 393 aaPredicted RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 TUBA1CQ9BQE3 449 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 OSBPL11Q9BXB4 747 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 C1QTNF3Q9BXJ4 246 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 MRPL46Q9H2W6 279 aaKnown RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 ANKRA2Q9H9E1 313 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 CALHM2Q9HA72 323 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 BRF2Q9HAW0 419 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 JKAMPQ9P055 326 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 PSME2Q9UL46 239 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 SNX6Q9UNH7 406 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 MAPRE3Q9UPY8 281 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 EXO1Q9UQ84 846 aaKnown RBP7.7□□□□□ -1.18
USP28-215ENST00000545608 FREM3P0C091 2139 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 MED12Q93074 2177 aa7.7□□□□□ -1.18
USP28-215ENST00000545608 ABCA4P78363 2273 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 SETD2Q9BYW2 2564 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 PRAMEF25A6NGN4 478 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 EEF1E1-BLOC1S5C9J1V9 151 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 MANBAO00462 879 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TO15178 435 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ACOX3O15254 700 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 EEF1E1O43324 174 aaKnown RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 REM1O75628 298 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CBR3O75828 277 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 URI1O94763 535 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 IL18BPO95998 194 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 RHOXF2BP0C7M4 288 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CTAGE8P0CG41 777 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TMIGD3P0DMS9 266 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 EPXP11678 715 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CYP4B1P13584 511 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CPN1P15169 458 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 KLK2P20151 261 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 DNASE1P24855 282 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ECHS1P30084 290 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 OPRM1P35372 400 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 DGKQP52824 942 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 DCAF7P61962 342 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TRA2BP62995 288 aaKnown RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 RAE1P78406 368 aaKnown RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 HMGCS1Q01581 520 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 SRYQ05066 204 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CLCQ05315 142 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 FOXD4Q12950 439 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 SNTA1Q13424 505 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 RCAN2Q14206 197 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ZNF628Q5EBL2 1059 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TEX35Q5T0J7 233 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ADGRE4PQ86SQ3 457 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 KIF18BQ86Y91 864 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TRIM42Q8IWZ5 723 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CTAGE4Q8IX94 777 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 MMGT1Q8N4V1 131 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 CDYL2Q8N8U2 506 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 NOA1Q8NC60 698 aaKnown RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 CHDHQ8NE62 594 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 OR14L1PQ8NHC6 308 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 IFT81Q8WYA0 676 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 KAT2AQ92830 837 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms