RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TMBIM1Q969X1 311 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 ZC3HAV1LQ96H79 300 aaKnown RBP16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 ELOVL5Q9NYP7 299 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 ADAM29Q9UKF5 820 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 PCDHA9Q9Y5H5 950 aa16.08■□□□□ 0.16
CLSTN3-214ENST00000542663 C1orf226A1L170 272 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 FRG2CA6NGY1 282 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 GOLGA6L10A6NI86 522 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 CLDN9O95484 217 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 GFAPP14136 432 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 NID1P14543 1247 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 GAS1P54826 345 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 MRPS25P82663 173 aaKnown RBP16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 MRPS35P82673 323 aaKnown RBP16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 LTB4RQ15722 352 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 CCNYL2Q5T2Q4 361 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 FAM180BQ6P0A1 224 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 PPM1NQ8N819 430 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 OR52B6Q8NGF0 335 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 TMCO6Q96DC7 493 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 SLC35A4Q96G79 324 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 COL21A1Q96P44 957 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 ANKRA2Q9H9E1 313 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 DKKL1Q9UK85 242 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 GPR55Q9Y2T6 319 aaPredicted RBP16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 ACOT9Q9Y305 439 aa16.07■□□□□ 0.16
CLSTN3-214ENST00000542663 H0YC42 278 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 C16orf97H3BN30 126 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 EIF3HO15372 352 aaKnown RBP eCLIP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 EMC8O43402 210 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 TSPAN2O60636 221 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 NME6O75414 186 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ERAL1O75616 437 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 CT45A8P0DMV1 189 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 CT45A9P0DMV2 189 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 PCSK2P16519 638 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 CSNK2A2P19784 350 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 GRK2P25098 689 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 DPP4P27487 766 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 SUCLG1P53597 346 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 TPD52P55327 224 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 SIRPAP78324 504 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 CT45A2Q5DJT8 189 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 FRG2Q64ET8 278 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ANKRD34AQ69YU3 496 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 PLEKHM3Q6ZWE6 761 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 UBQLNLQ8IYU4 475 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 METTL4Q8N3J2 472 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF610Q8N9Z0 462 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 TRPC4APQ8TEL6 797 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 CNRIP1Q96F85 164 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF845Q96IR2 970 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF681Q96N22 645 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 FRG2BQ96QU4 278 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ADOQ96SZ5 270 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 LRRC1Q9BTT6 524 aa16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 NOL11Q9H8H0 719 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 ZNF701Q9NV72 531 aaPredicted RBP16.06■□□□□ 0.16
CLSTN3-214ENST00000542663 CCDC188H7C350 402 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 REM1O75628 298 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 SOX30O94993 753 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 THBDP07204 575 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 CD8BP10966 210 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 MAPK12P53778 367 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 CORO7P57737 925 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 GUSBP1Q15486 140 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 PAGE2Q7Z2X7 111 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 TM4SF18Q96CE8 201 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 KLHL29Q96CT2 875 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 GPR78Q96P69 363 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 BTBD9Q96Q07 612 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 SLC39A3Q9BRY0 314 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 DPH5Q9H2P9 285 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 RNF122Q9H9V4 155 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 PRODH2Q9UF12 536 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 ABCA1O95477 2261 aa16.05■□□□□ 0.16
CLSTN3-214ENST00000542663 YLPM1P49750 1951 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 A0A087X1B8 175 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 HMX2A2RU54 273 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 KLF4O43474 513 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 ABCB7O75027 752 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 C2P06681 752 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 GSTA2P09210 222 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 CTAGE8P0CG41 777 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 PEPDP12955 493 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 DEKP35659 375 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 KCNJ5P48544 419 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 GALNT1Q10472 559 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 TRAF3Q13114 568 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 TNK1Q13470 666 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 ACAP2Q15057 778 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 FAM83EQ2M2I3 478 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 FAM219BQ5XKK7 198 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 NPSR1Q6W5P4 371 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 CHMP1BQ7LBR1 199 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 COMMD6Q7Z4G1 85 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 CTAGE4Q8IX94 777 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 MEIOBQ8N635 442 aa16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 GBP7Q8N8V2 638 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-214ENST00000542663 CAVIN3Q969G5 261 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms