RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	SLC9A5	Q14940	896 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	SSX1	Q16384	188 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	RPE65	Q16518	533 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	CLEC12A	Q5QGZ9	265 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	C6orf132	Q5T0Z8	1188 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	RAB43	Q86YS6	212 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	KBTBD8	Q8NFY9	601 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	MGLL	Q99685	303 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	PLCXD1	Q9NUJ7	323 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	CNIH4	Q9P003	139 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	CCDC59	Q9P031	241 aa	Known RBP	13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	RWDD3	Q9Y3V2	267 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	DENND4A	Q7Z401	1863 aa		13.89	□□□□□ -0.19
DDX55-209	ENST00000542286	ARHGAP33	O14559	1287 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	FCMR	O60667	390 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	BTN3A2	P78410	334 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ACSM5	Q6NUN0	579 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ABHD17C	Q6PCB6	329 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	NOXA1	Q86UR1	476 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	NATD1	Q8N6N6	113 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	DENND6B	Q8NEG7	585 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	PIK3R3	Q92569	461 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	FCGR1B	Q92637	280 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	RNF170	Q96K19	258 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	COQ7	Q99807	217 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	POLM	Q9NP87	494 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	MAN2C1	Q9NTJ4	1040 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ASB4	Q9Y574	426 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	TDRD6	O60522	2096 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CPSF4L	A6NMK7	179 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CTDSP2	O14595	271 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	KIAA0513	O60268	411 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	UGT2B17	O75795	530 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CH25H	O95992	272 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	TP53	P04637	393 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	YES1	P07947	543 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	UBL4A	P11441	157 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ATP5A1	P25705	553 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	HTR2B	P41595	481 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	FRK	P42685	505 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	KIR2DL1	P43626	348 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	TMEM203	Q969S6	136 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	FYTTD1	Q96QD9	318 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	OR2A14	Q96R47	310 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	APOO	Q9BUR5	198 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	TOR4A	Q9NXH8	423 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	STMN3	Q9NZ72	180 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	GDE1	Q9NZC3	331 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	P2RX2	Q9UBL9	471 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ACSL5	Q9ULC5	683 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286		A0A0G2JMP0	313 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	TFEC	O14948	347 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	GPX5	O75715	221 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ASGR2	P07307	311 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	OSM	P13725	252 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	C5AR1	P21730	350 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	AVPR1B	P47901	424 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	PXN	P49023	591 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ADPRH	P54922	357 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	SRSF5	Q13243	272 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ENPP7	Q6UWV6	458 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CCDC190	Q86UF4	302 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	ZNF761	Q86XN6	746 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	TBC1D19	Q8N5T2	526 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	OR4K5	Q8NGD3	323 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CEP19	Q96LK0	163 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	DHRS9	Q9BPW9	319 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CNPPD1	Q9BV87	410 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	NKX2-4	Q9H2Z4	354 aa		13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	RANGRF	Q9HD47	186 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	YARS2	Q9Y2Z4	477 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-209	ENST00000542286	CENPVL1	A0A0U1RR11	272 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	MEIOC	A2RUB1	952 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	HMX3	A6NHT5	357 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	ZIC2	O95409	532 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	ETV6	P41212	452 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	UGT2B15	P54855	530 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	MXD1	Q05195	221 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	ZNF542P	Q5EBM4	170 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	FAM46D	Q8NEK8	389 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	OR10G6	Q8NH81	332 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	OR1E3	Q8WZA6	343 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	CLN6	Q9NWW5	311 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	DSPP	Q9NZW4	1301 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286		A0A0X1KG70	313 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	LINC00854	A0A1B0GVQ3	168 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	CLEC3A	O75596	197 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	CYP7B1	O75881	506 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	RFX2	P48378	723 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	SIM1	P81133	766 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	IRF3	Q14653	427 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	TJAP1	Q5JTD0	557 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	CCNJ	Q5T5M9	372 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	ANKRD54	Q6NXT1	300 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	FAM111B	Q6SJ93	734 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	CCDC28A	Q8IWP9	274 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	OR5H6	Q8NGV6	325 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	TMCO6	Q96DC7	493 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	ZNF607	Q96SK3	696 aa		13.87	□□□□□ -0.19
DDX55-209	ENST00000542286	CCDC32	Q9BV29	185 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms