RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	CPE	P16870	476 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	AK4	P27144	223 aa	Predicted RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	RAB28	P51157	221 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	PRKAG1	P54619	331 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	REEP5	Q00765	189 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	DGLUCY	Q7Z3D6	616 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	ZER1	Q7Z7L7	766 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	NUDT13	Q86X67	352 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	CAMKK1	Q8N5S9	505 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	ZNF582	Q96NG8	517 aa	Predicted RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	ZNF607	Q96SK3	696 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	YIPF4	Q9BSR8	244 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	BTBD1	Q9H0C5	482 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	RHBG	Q9H310	441 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	PELI2	Q9HAT8	420 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	KCNK12	Q9HB15	430 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	TOR4A	Q9NXH8	423 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	ACAD8	Q9UKU7	415 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	MYO15A	Q9UKN7	3530 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	KNL1	Q8NG31	2342 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	EML2	O95834	649 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	TSPAN19	P0C672	248 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	HOXB2	P14652	356 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	BCL6	P41182	706 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	CCT3	P49368	545 aa	Known RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	ADPRH	P54922	357 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	CAV3	P56539	151 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	RPS25	P62851	125 aa	Known RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	HOXC5	Q00444	222 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	TFF2	Q03403	129 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	PRDX1	Q06830	199 aa	Known RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	ASAH1	Q13510	395 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	PYDC2	Q56P42	97 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	RNLS	Q5VYX0	342 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	XKRX	Q6PP77	449 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	C11orf74	Q86VG3	221 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	IQCH	Q86VS3	1027 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	RAB42	Q8N4Z0	105 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	FBXL6	Q8N531	539 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	FAM26E	Q8N5C1	309 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	FAM181A	Q8N9Y4	354 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	GALNT6	Q8NCL4	622 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	OR8K5	Q8NH50	307 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	XAGE5	Q8WWM1	108 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	GATAD2B	Q8WXI9	593 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	TM9SF4	Q92544	642 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	RGMA	Q96B86	450 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	C1GALT1C1	Q96EU7	318 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	MSLNL	Q96KJ4	702 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	FCRL4	Q96PJ5	515 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	TM9SF2	Q99805	663 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	C1QTNF2	Q9BXJ5	285 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	POLDIP3	Q9BY77	421 aa	Known RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	AICDA	Q9GZX7	198 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	NEUROD4	Q9HD90	331 aa		11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	MRPS30	Q9NP92	439 aa	Known RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204	TES	Q9UGI8	421 aa	Known RBP	11.77	□□□□□ -0.53
RNF4-222	ENST00000541204		B4DXG7	233 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	NARS	O43776	548 aa	Known RBP	11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	EGF	P01133	1207 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	C8orf89	P0DMQ9	161 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	GPC1	P35052	558 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	GIPR	P48546	466 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	PCBP4	P57723	403 aa	Known RBP	11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	RAB8A	P61006	207 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	ZNF793	Q6ZN11	406 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	LAPTM4B	Q86VI4	370 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	TRIM48	Q8IWZ4	208 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	CLDN22	Q8N7P3	220 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	IL17RC	Q8NAC3	791 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	OR4E2	Q8NGC2	313 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	OR4K5	Q8NGD3	323 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	CCL4L1	Q8NHW4	92 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	UBASH3B	Q8TF42	649 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC7A6	Q92536	515 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	ELSPBP1	Q96BH3	223 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	DPH7	Q9BTV6	452 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	APOO	Q9BUR5	198 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	FNDC11	Q9BVV2	318 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	SYNPO2L	Q9H987	977 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	GPR52	Q9Y2T5	361 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	ATG2A	Q2TAZ0	1938 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204		A0A0B4J293	547 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	C4orf51	C9J302	202 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	ERI3	O43414	337 aa	Known RBP	11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	NTSR1	P30989	418 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	HSD17B2	P37059	387 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	RPS5	P46782	204 aa	Known RBP	11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	CD83	Q01151	205 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	BNC1	Q01954	994 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	ENPP2	Q13822	863 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	SNAPC1	Q16533	368 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	SLC35F1	Q5T1Q4	408 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	DDI2	Q5TDH0	399 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	NDUFAF5	Q5TEU4	345 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	OR4C11	Q6IEV9	310 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	SDE2	Q6IQ49	451 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	SHF	Q7M4L6	423 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	RNF31	Q96EP0	1072 aa		11.76	□□□□□ -0.53
RNF4-222	ENST00000541204	KCTD7	Q96MP8	289 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms