RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TP53P04637 393 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 CBX3Q13185 183 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 SPHARQ15513 63 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 FAM160A2Q8N612 972 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 FAIM2Q9BWQ8 316 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 BARHL1Q9BZE3 327 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 PCDHGA4Q9Y5G9 962 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 AP3D1O14617 1153 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 SNX4O95219 450 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 CSNK2A2P19784 350 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 CPN2P22792 545 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 GSTM5P46439 218 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 GIPRP48546 466 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 TGM3Q08188 693 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 HYAL1Q12794 435 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 ARHGAP19Q14CB8 494 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 LAX1Q8IWV1 398 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 NRMQ8IXM6 262 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 OR2L5Q8NG80 312 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 GPR151Q8TDV0 419 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 CEP19Q96LK0 163 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 DCLRE1CQ96SD1 692 aaKnown RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 C1QTNF2Q9BXJ5 285 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 ENKD1Q9H0I2 346 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 SLC28A3Q9HAS3 691 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 INIPQ9NRY2 104 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 GPC6Q9Y625 555 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 ABCA7Q8IZY2 2146 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 H3BQ06 376 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 PEX12O00623 359 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 CLEC3AO75596 197 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 FBXO42Q6P3S6 717 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 TMEM92Q6UXU6 159 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 ATCAYQ86WG3 371 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 LYSMD2Q8IV50 215 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 ADAMTS15Q8TE58 950 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 ELP4Q96EB1 424 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 C1GALT1C1Q96EU7 318 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 SLC38A1Q9H2H9 487 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 KCND3Q9UK17 655 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 CLCA2Q9UQC9 943 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 SLC9A8Q9Y2E8 581 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 ZNF780BQ9Y6R6 833 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 A0A1B0GVC2 190 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 A6NIN4 97 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 AGAP5A6NIR3 686 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 CDRT1O95170 752 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 ATP6V1E1P36543 226 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 EIF2DP41214 584 aaKnown RBP15.85■□□□□ 0.13
USP28-208ENST00000540438 RUNX2Q13950 521 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 ZNF791Q3KP31 576 aaPredicted RBP15.85■□□□□ 0.13
USP28-208ENST00000540438 PLEKHG7Q6ZR37 379 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 EGFL6Q8IUX8 553 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 OR2L8Q8NGY9 312 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 PHOSPHO2Q8TCD6 241 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 VMP1Q96GC9 406 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 TBC1D17Q9HA65 648 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 ATP13A2Q9NQ11 1180 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 CLDND1Q9NY35 253 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 GMEB1Q9Y692 573 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 CLCA3PQ9Y6N3 262 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 CCRL2O00421 344 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 MYL12BO14950 172 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 TGM1P22735 817 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 NTSR1P30989 418 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 LSSP48449 732 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 RGS8P57771 180 aaPredicted RBP15.85■□□□□ 0.13
USP28-208ENST00000540438 GPR18Q14330 331 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 SYT14P1Q58G82 188 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 USP43Q70EL4 1123 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 KLHL6Q8WZ60 621 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 MROQ9BYG7 248 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 C2orf42Q9NWW7 574 aa15.85■□□□□ 0.13
USP28-208ENST00000540438 PROM1O43490 865 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 CCNYL3P0C7X3 344 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 ACADMP11310 421 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 F3P13726 295 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 IRF3Q14653 427 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 MAPK14Q16539 360 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 NIPAL1Q6NVV3 410 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 RPLP0P6Q8NHW5 317 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 BBS10Q8TAM1 723 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 OR2M4Q96R27 311 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 HDHD5Q9BXW7 423 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 SAP130Q9H0E3 1048 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 GIMAP4Q9NUV9 329 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 FKBP14Q9NWM8 211 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 ANKMY1Q9P2S6 941 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 NDRG2Q9UN36 371 aaKnown RBP15.84■□□□□ 0.13
USP28-208ENST00000540438 HRO43593 1189 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 ADAP00813 363 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 CMPK1P30085 196 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 DESI1Q6ICB0 168 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 CDC73Q6P1J9 531 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 SLC48A1Q6P1K1 146 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 TRIM48Q8IWZ4 208 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 GRHL3Q8TE85 626 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 TM9SF4Q92544 642 aa15.84■□□□□ 0.13
USP28-208ENST00000540438 BMFQ96LC9 184 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms