RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TMEM211Q6ICI0 200 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 ZNF585AQ6P3V2 769 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 SLC44A2Q8IWA5 706 aaPredicted RBP13.53□□□□□ -0.24
USP28-204ENST00000537642 OR2L13Q8N349 312 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 CLHC1Q8NHS4 586 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 NEIL3Q8TAT5 605 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 CIDECQ96AQ7 238 aaPredicted RBP13.53□□□□□ -0.24
USP28-204ENST00000537642 SARAFQ96BY9 339 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 SDCCAG3Q96C92 435 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 ELP4Q96EB1 424 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 ZNF764Q96H86 408 aaPredicted RBP13.53□□□□□ -0.24
USP28-204ENST00000537642 C3orf30Q96M34 536 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 COL21A1Q96P44 957 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 OSBPL11Q9BXB4 747 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 REEP4Q9H6H4 257 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 C19orf53Q9UNZ5 99 aaPredicted RBP13.53□□□□□ -0.24
USP28-204ENST00000537642 C15orf41Q9Y2V0 281 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 MED12Q93074 2177 aa13.52□□□□□ -0.24
USP28-204ENST00000537642 WDR91A4D1P6 747 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 C2orf72A6NCS6 295 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 PRAMEF25A6NGN4 478 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 UPK1AO00322 258 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 GNB5O14775 395 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 SNPHO15079 494 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 PDPK1O15530 556 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ITM2AO43736 263 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ICOSLGO75144 302 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 COQ9O75208 318 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 LYPLA1O75608 230 aaPredicted RBP13.52□□□□□ -0.25
USP28-204ENST00000537642 DHRS4L1P0CG22 281 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 BCKDHAP12694 445 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ACVR2AP27037 513 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 CDK9P50750 372 aaKnown RBP13.52□□□□□ -0.25
USP28-204ENST00000537642 NUP107P57740 925 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 PSG6Q00889 435 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ZNF155Q12901 538 aaPredicted RBP13.52□□□□□ -0.25
USP28-204ENST00000537642 PDE7AQ13946 482 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 MPP2Q14168 576 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 TIGD3Q6B0B8 471 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 RTL6Q6ICC9 239 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 SLC30A6Q6NXT4 461 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ZNF551Q7Z340 670 aaPredicted RBP13.52□□□□□ -0.25
USP28-204ENST00000537642 OR4N2Q8NGD1 307 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 SLC35A4Q96G79 324 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 PPP3R2Q96LZ3 170 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ADOQ96SZ5 270 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 CENPHQ9H3R5 247 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ZNF395Q9H8N7 513 aaPredicted RBP13.52□□□□□ -0.25
USP28-204ENST00000537642 GALNT9Q9HCQ5 603 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 DDX18Q9NVP1 670 aaKnown RBP13.52□□□□□ -0.25
USP28-204ENST00000537642 ACAD8Q9UKU7 415 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 FAM215AQ9Y5M1 114 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ARHGAP21Q5T5U3 1957 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 ITPR2Q14571 2701 aa13.52□□□□□ -0.25
USP28-204ENST00000537642 FIGNL2A6NMB9 653 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 C19orf84I3L1E1 186 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 TM9SF1O15321 606 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 BIRC5O15392 142 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 HNRNPRO43390 633 aaKnown RBP13.51□□□□□ -0.25
USP28-204ENST00000537642 ABCB7O75027 752 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 PEX11AO75192 247 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 SKAP2O75563 359 aaPredicted RBP13.51□□□□□ -0.25
USP28-204ENST00000537642 TRAPPC6AO75865 159 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 HPNP05981 417 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 IFI6P09912 130 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 PTPN6P29350 595 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 FRKP42685 505 aaPredicted RBP13.51□□□□□ -0.25
USP28-204ENST00000537642 PMPCAQ10713 525 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 HSPB3Q12988 150 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 SNTA1Q13424 505 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 CHI3L2Q15782 390 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 WLSQ5T9L3 541 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 ANGPTL8Q6UXH0 198 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 LRIG3Q6UXM1 1119 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 LARP4Q71RC2 724 aaKnown RBP eCLIP13.51□□□□□ -0.25
USP28-204ENST00000537642 WDR53Q7Z5U6 358 aaPredicted RBP13.51□□□□□ -0.25
USP28-204ENST00000537642 LIX1Q8N485 282 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 OR1J4Q8NGS1 313 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 PPP1R14CQ8TAE6 165 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 MARVELD3Q96A59 401 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 PPCDCQ96CD2 204 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 TMCO6Q96DC7 493 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 CHST11Q9NPF2 352 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 COQ3Q9NZJ6 369 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 KLRF1Q9NZS2 232 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 SH3BP4Q9P0V3 963 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 RNF6Q9Y252 685 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 ACTL7BQ9Y614 415 aa13.51□□□□□ -0.25
USP28-204ENST00000537642 NUP214P35658 2090 aaPredicted RBP13.51□□□□□ -0.25
USP28-204ENST00000537642 WDR1O75083 606 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 SERPINE1P05121 402 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 ELAVL4P26378 380 aaKnown RBP13.5□□□□□ -0.25
USP28-204ENST00000537642 IL12BP29460 328 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 KRT20P35900 424 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 ASMTP46597 345 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 PNLIPRP2P54317 469 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 PSPHP78330 225 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 CRYZQ08257 329 aaKnown RBP13.5□□□□□ -0.25
USP28-204ENST00000537642 EFR3AQ14156 821 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 ATP6AP1LQ52LC2 224 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms