RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	VEZF1	Q14119	521 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF460	Q14592	562 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	BCL2A1	Q16548	175 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	C18orf63	Q68DL7	685 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR52E8	Q6IFG1	317 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF704	Q6ZNC4	412 aa	Predicted RBP	11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	NUP54	Q7Z3B4	507 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZC3HC1	Q86WB0	502 aa	Known RBP	11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	GPSM1	Q86YR5	675 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	TRIM42	Q8IWZ5	723 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF611	Q8N823	705 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF615	Q8N8J6	731 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	CNEP1R1	Q8N9A8	125 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR7G3	Q8NG95	312 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	ANKRD49	Q8WVL7	239 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR10A5	Q9H207	317 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	INTS9	Q9NV88	658 aa	Known RBP	11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	NSMCE4A	Q9NXX6	385 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	TAS2R10	Q9NYW0	307 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	KLRF1	Q9NZS2	232 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	TBK1	Q9UHD2	729 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	CFL2	Q9Y281	166 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	MRPS18C	Q9Y3D5	142 aa	Known RBP	11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	TSC22D4	Q9Y3Q8	395 aa		11.25	□□□□□ -0.61
CAPN1-223	ENST00000533079	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	TMEM120B	A0PK00	339 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	GMNC	A6NCL1	334 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	SLC22A20	A6NK97	555 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	SAP18	O00422	153 aa	Known RBP	11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	HS3ST1	O14792	307 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	EMC8	O43402	210 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	TYROBP	O43914	113 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	CCNT2	O60583	730 aa	Known RBP	11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	TGM6	O95932	706 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	NID1	P14543	1247 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	EPOR	P19235	508 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	GPX3	P22352	226 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	GMPR	P36959	345 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	KCNJ5	P48544	419 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	TAS2R39	P59534	338 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	PHEX	P78562	749 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	CLEC12B	Q2HXU8	276 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	CHRFAM7A	Q494W8	412 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	GRTP1	Q5TC63	336 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	MRM1	Q6IN84	353 aa	Known RBP	11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	VWA1	Q6PCB0	445 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF474	Q6S9Z5	364 aa	Predicted RBP	11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	CHMP1B	Q7LBR1	199 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	BTLA	Q7Z6A9	289 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	PPM1N	Q8N819	430 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	ACMSD	Q8TDX5	336 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	HGD	Q93099	445 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	SFXN2	Q96NB2	322 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	CPNE1	Q99829	537 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	SERHL	Q9NQF3	203 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	SMYD2	Q9NRG4	433 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	MKS1	Q9NXB0	559 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079	NKIRAS1	Q9NYS0	192 aa		11.24	□□□□□ -0.61
CAPN1-223	ENST00000533079		A0A0A6YYD5	115 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PRAMEF25	A6NGN4	478 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	CXorf49	A8MYA2	514 aa	Predicted RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	RNF223	E7ERA6	249 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	TM9SF1	O15321	606 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PHF1	O43189	567 aa	Predicted RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ABCB7	O75027	752 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PRKRA	O75569	313 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ALDOA	P04075	364 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	S100B	P04271	92 aa	Predicted RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	FAM157C	P0CG43	387 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PTGDS	P41222	190 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	SLC12A2	P55011	1212 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	EEFSEC	P57772	596 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ATP6V0D1	P61421	351 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	RPS4X	P62701	263 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PLCXD2	Q0VAA5	305 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	MPP2	Q14168	576 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	GRHL2	Q6ISB3	625 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	TRMT10B	Q6PF06	316 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	CYP20A1	Q6UW02	462 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF550	Q7Z398	422 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PLCZ1	Q86YW0	608 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	CTAGE3P	Q8IX95	158 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PRR22	Q8IZ63	422 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	BANP	Q8N9N5	519 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	WDSUB1	Q8N9V3	476 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	TRMT61A	Q96FX7	289 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ZNF845	Q96IR2	970 aa	Predicted RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PIGQ	Q9BRB3	760 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	SORBS1	Q9BX66	1292 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	REG4	Q9BYZ8	158 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	CD244	Q9BZW8	370 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	NXF5	Q9H1B4	397 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	OPN3	Q9H1Y3	402 aa	Predicted RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	OR51B5	Q9H339	312 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	RHOJ	Q9H4E5	214 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	DDX31	Q9H8H2	851 aa	Known RBP	11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	GALNT9	Q9HCQ5	603 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	CD274	Q9NZQ7	290 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	ASB4	Q9Y574	426 aa		11.23	□□□□□ -0.61
CAPN1-223	ENST00000533079	PSAT1	Q9Y617	370 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms