RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	CDK20	Q8IZL9	346 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	C12orf45	Q8N5I9	185 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-231	ENST00000531110	NANOGP1	Q8N7R0	232 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	PTGR2	Q8N8N7	351 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-231	ENST00000531110	OR4M2	Q8NGB6	313 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF671	Q8TAW3	534 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	TAS1R2	Q8TE23	839 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	GRHL3	Q8TE85	626 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	LIPH	Q8WWY8	451 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	DEDD2	Q8WXF8	326 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	C22orf15	Q8WYQ4	148 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	SLC7A6	Q92536	515 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	C3orf49	Q96BT1	292 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	FBXL8	Q96CD0	374 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	TPD52L3	Q96J77	140 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	NEURL4	Q96JN8	1562 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	FOXN4	Q96NZ1	517 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	SEPT5	Q99719	369 aa	Predicted RBP	5.27	□□□□□ -1.57
CD44-231	ENST00000531110	TRMO	Q9BU70	441 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	MRPL13	Q9BYD1	178 aa	Known RBP	5.27	□□□□□ -1.57
CD44-231	ENST00000531110	ARHGAP39	Q9C0H5	1083 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	SDCBP2	Q9H190	292 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	SLC22A11	Q9NSA0	550 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	SMARCAL1	Q9NZC9	954 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	TMEM216	Q9P0N5	145 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	DUX4	Q9UBX2	424 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	KL	Q9UEF7	1012 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	OR12D3	Q9UGF7	316 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	MLX	Q9UH92	298 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	TNN	Q9UQP3	1299 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	PIN4	Q9Y237	131 aa	Known RBP	5.27	□□□□□ -1.57
CD44-231	ENST00000531110	CUL7	Q14999	1698 aa		5.27	□□□□□ -1.57
CD44-231	ENST00000531110	PHRF1	Q9P1Y6	1649 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CFTR	P13569	1480 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	LMTK3	Q96Q04	1460 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	DCC	P43146	1447 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SPEF2	Q9C093	1822 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TEX13C	A0A0J9YWL9	993 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SERTM2	A0A1B0GWG4	89 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MEIOC	A2RUB1	952 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	FAM90A20P	A6NIJ5	464 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	AGAP5	A6NIR3	686 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PP2D1	A8MPX8	630 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TCP10L2	B9ZVM9	353 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NEDD8-MDP1	E9PL57	170 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PDHX	O00330	501 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CYTIP	O60759	359 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MED6	O75586	246 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	KRT33A	O76009	404 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	F9	P00740	461 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	FGG	P02679	453 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	FTH1	P02794	183 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	C2	P06681	752 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CD3G	P09693	182 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ALDOC	P09972	364 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TMEM191B	P0C7N4	346 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	RNF224	P0DH78	156 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ODC1	P11926	461 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PFKFB1	P16118	471 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF26	P17031	533 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	RPL35	P42766	123 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	GABRA4	P48169	554 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	LHX1	P48742	406 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TGM4	P49221	684 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CRYBB1	P53674	252 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	IFITM3	Q01628	133 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SEMG2	Q02383	582 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	GNA12	Q03113	381 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	LIPE	Q05469	1076 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	KLRC3	Q07444	240 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	BIK	Q13323	160 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NAE1	Q13564	534 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ALKBH1	Q13686	389 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CTTN	Q14247	550 aa	Known RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ZNF674	Q2M3X9	581 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	HKDC1	Q2TB90	917 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MOGAT2	Q3SYC2	334 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	COQ5	Q5HYK3	327 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PAGE2B	Q5JRK9	111 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	EOGT	Q5NDL2	527 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	C10orf120	Q5SQS8	335 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	STXBP5	Q5T5C0	1151 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	HEPHL1	Q6MZM0	1159 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	WDR59	Q6PJI9	974 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	IL27RA	Q6UWB1	636 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	TEX261	Q6UWH6	196 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	CD300LG	Q6UXG3	332 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	DLEU7	Q6UYE1	221 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	SLC16A14	Q7RTX9	510 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	C16orf62	Q7Z3J2	963 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	PIP4P1	Q86T03	277 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	RAB43	Q86YS6	212 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	C4orf33	Q8N1A6	199 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MYCT1	Q8N699	235 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	ARL14EP	Q8N8R7	260 aa	Predicted RBP	5.26	□□□□□ -1.57
CD44-231	ENST00000531110	NANP	Q8TBE9	248 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MITD1	Q8WV92	249 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	MR1	Q95460	341 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	S100PBP	Q96BU1	408 aa		5.26	□□□□□ -1.57
CD44-231	ENST00000531110	OR1F2P	Q96R84	312 aa		5.26	□□□□□ -1.57

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