RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ATP8B3O60423 1300 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ROBO1Q9Y6N7 1651 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.14□□□□□ -1.91
CD44-217ENST00000525348 VWDEQ8N2E2 1590 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 DNMT1P26358 1616 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 IGKV6D-41A0A0C4DH26 115 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 MACROD2A1Z1Q3 448 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 MIF4GDA9UHW6 222 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 GOLGA8KD6RF30 607 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 F8VVB4 439 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 F8VWA3 439 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 H3BMM5 538 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 HIP1O00291 1037 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 MAGEB2O15479 319 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 GPRIN2O60269 458 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CACNG3O60359 315 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 PRAF2O60831 178 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SHOX2O60902 331 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 NDUFS6O75380 124 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 SEMA3DO95025 777 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 GNA14O95837 355 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 HMOX1P09601 288 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 UBTFL6P0CB48 400 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 STAG3L1P0CL83 205 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 BMI1P35226 326 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ACAA2P42765 397 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 ATP4BP51164 291 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 PRELPP51888 382 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ARHGDIAP52565 204 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 NDST2P52849 883 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 BTG1P62324 171 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 HPCAP84074 193 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 FKBP3Q00688 224 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 RELAQ04206 551 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ZNF33BQ06732 778 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 FCHO2Q0JRZ9 810 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CHIT1Q13231 466 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 PEX6Q13608 980 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ARHGAP19Q14CB8 494 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 PON2Q15165 354 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 TRADDQ15628 312 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 TAZQ16635 292 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 C15orf32Q32M92 178 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 FAM106AQ4KMX7 169 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CMPK2Q5EBM0 449 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 HERC4Q5GLZ8 1057 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 LIN9Q5TKA1 542 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 KCTD16Q68DU8 428 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SNRNP48Q6IEG0 339 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 FAM166AQ6J272 317 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SLC25A24Q6NUK1 477 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 DCLRE1AQ6PJP8 1040 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ISLR2Q6UXK2 745 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CDHR3Q6ZTQ4 885 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CYP4V2Q6ZWL3 525 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 SLFN11Q7Z7L1 901 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 STX12Q86Y82 276 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SLC22A15Q8IZD6 547 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CEP112Q8N8E3 955 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 FAM133AQ8N9E0 248 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CAMKVQ8NCB2 501 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 OR52B6Q8NGF0 335 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 LIPHQ8WWY8 451 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 MRPS27Q92552 414 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 RMDN1Q96DB5 314 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 PGM2Q96G03 612 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 PPP1R36Q96LQ0 422 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 C1orf147Q96MC9 270 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 GDAP1L1Q96MZ0 367 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SELENOSQ9BQE4 189 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 LSG1Q9H089 658 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 OR10A4Q9H209 315 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 CUEDC2Q9H467 287 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 FN3KQ9H479 309 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SLC40A1Q9NP59 571 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ZDHHC4Q9NPG8 344 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 RMND1Q9NWS8 449 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 MRPL39Q9NYK5 338 aaKnown RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 UXTQ9UBK9 157 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 CD300AQ9UGN4 299 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 POMT2Q9UKY4 750 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 SNX6Q9UNH7 406 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 GINS2Q9Y248 185 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 ERGIC3Q9Y282 383 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 NAALAD2Q9Y3Q0 740 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 KLF2Q9Y5W3 355 aaPredicted RBP3.13□□□□□ -1.91
CD44-217ENST00000525348 LIPGQ9Y5X9 500 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 COMMD3-BMI1R4GMX3 469 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 MYO5CQ9NQX4 1742 aa3.13□□□□□ -1.91
CD44-217ENST00000525348 KTN1Q86UP2 1357 aaKnown RBP3.12□□□□□ -1.91
CD44-217ENST00000525348 PLEKHG1Q9ULL1 1385 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 MROH2AA6NES4 1674 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 TCOF1Q13428 1488 aaKnown RBP3.12□□□□□ -1.91
CD44-217ENST00000525348 RAPGEF2Q9Y4G8 1499 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 A0A1W2PPW3 197 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 LOC390937A0A1W2PQ73 354 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 XKRY2A2RUG3 117 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 FUOMA2VDF0 154 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 A8MXE2 369 aa3.12□□□□□ -1.91
CD44-217ENST00000525348 CXCL11O14625 94 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms